Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.9e-197 691.8 376 100.0
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 3.3e-68 263.1 350 46.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.3e-68 262.7 255 57.6
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.1e-66 258.1 255 56.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.0e-65 253.8 266 54.9
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.4e-63 247.7 264 54.2
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.4e-63 247.7 349 43.0
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.9e-63 247.3 246 57.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 2.1e-62 243.8 352 44.0
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.8e-61 240.7 271 50.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.9e-61 239.6 353 43.6
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 8.8e-61 238.4 253 53.8
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.1e-60 238.0 282 49.6
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 3.3e-60 236.5 294 50.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 5.7e-60 235.7 347 43.2
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 3.7e-59 233.0 415 40.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.7e-59 233.0 354 44.6
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 8.2e-59 231.9 254 51.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.8e-58 230.7 389 41.1
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.4e-58 230.3 251 53.4
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 9.1e-58 228.4 271 50.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.6e-57 227.6 349 42.4
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 6.5e-56 222.2 260 49.2
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.1e-55 221.5 242 51.2
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.5e-55 221.1 373 40.8
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 2.5e-55 220.3 364 42.9
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.2e-55 219.9 348 44.0
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.2e-55 219.5 415 38.8
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 7.2e-55 218.8 351 42.2
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 7.2e-55 218.8 355 42.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 7.2e-55 218.8 350 42.3
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.2e-54 218.0 351 42.2
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.6e-54 217.6 255 50.6
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-54 217.2 263 51.7
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.0e-53 213.0 257 48.6
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 5.2e-53 212.6 252 48.0
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 6.7e-53 212.2 257 48.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.1e-52 211.5 255 49.0
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.5e-52 211.1 349 40.7
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.5e-52 211.1 350 42.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 2.0e-52 210.7 373 38.9
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 4.4e-52 209.5 229 51.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.3e-51 208.0 305 46.9
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-51 208.0 349 39.0
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.7e-51 207.6 247 49.8
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.8e-51 206.8 350 41.7
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 3.7e-51 206.5 253 47.4
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-49 201.1 350 38.3
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 2.0e-49 200.7 267 47.2
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.0e-49 200.7 256 45.7
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 4.5e-49 199.5 258 46.1
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 5.9e-49 199.1 351 38.7
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.7e-48 197.6 273 46.5
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-48 197.6 259 45.2
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 3.8e-48 196.4 262 45.0
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 3.8e-48 196.4 245 49.4
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 5.0e-48 196.1 352 42.0
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 6.5e-48 195.7 374 37.7
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.1e-47 194.9 234 49.6
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.5e-47 194.5 257 49.4
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.9e-47 194.1 297 44.4
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 4.2e-47 193.0 352 37.8
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 7.2e-47 192.2 346 41.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.7e-46 190.3 347 40.3
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 3.6e-46 189.9 351 37.6
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.6e-46 189.9 172 57.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.8e-45 187.6 176 57.4
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 4.0e-45 186.4 364 39.0
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.2e-45 186.0 153 62.7
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 6.8e-45 185.7 153 62.7
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 6.8e-45 185.7 247 45.3
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.2e-44 184.9 248 46.4
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.2e-44 184.9 370 36.8
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.2e-44 184.9 245 47.8
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.5e-44 184.5 360 37.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.5e-44 184.5 247 47.0
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.5e-44 184.5 237 46.4
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.0e-44 184.1 335 37.9
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 5.7e-44 182.6 363 38.8
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 5.7e-44 182.6 285 41.1
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 7.5e-44 182.2 255 42.0
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.2e-43 180.6 247 44.5
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 3.7e-43 179.9 358 39.1
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.3e-43 179.1 257 44.0
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 6.3e-43 179.1 266 45.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.1e-42 178.3 245 46.9
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-42 177.6 263 42.2
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.8e-42 177.6 272 41.2
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-42 176.8 260 42.3
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 4.1e-42 176.4 245 44.9
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 7.0e-42 175.6 321 39.6
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 9.1e-42 175.3 261 47.5
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.6e-41 174.5 187 52.4
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.0e-41 174.1 259 43.2
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 5.9e-41 172.6 259 41.7
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.3e-40 171.4 243 44.4
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-40 171.0 219 46.1
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.2e-40 170.6 251 42.6
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-40 170.6 253 43.1
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 2.2e-40 170.6 147 54.4
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.9e-40 170.2 245 43.3
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.5e-39 167.9 358 37.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.9e-39 167.5 260 41.5
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-39 166.8 256 45.3
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.2e-38 164.9 244 43.9
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.2e-38 164.9 244 43.9
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.2e-38 164.9 367 35.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.3e-37 160.6 244 43.9
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 5.2e-37 159.5 237 43.5
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.2e-36 158.3 259 42.5
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 4.4e-36 156.4 227 41.9
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 4.4e-36 156.4 149 53.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 5.7e-36 156.0 344 34.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 7.5e-36 155.6 228 42.5
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 3.7e-35 153.3 207 44.4
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 3.7e-35 153.3 235 40.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 4.9e-35 152.9 238 43.3
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 3.1e-34 150.2 228 44.7
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 9.2e-34 148.7 236 41.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.6e-33 147.9 179 48.0
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.7e-33 147.1 204 44.6
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 3.5e-33 146.7 116 62.9
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 4.5e-33 146.4 236 43.2
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 4.5e-33 146.4 192 43.8
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 7.7e-33 145.6 241 41.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.0e-32 145.2 139 54.0
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.3e-32 144.8 246 39.4
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.1e-31 141.7 260 40.0
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.1e-31 141.7 260 40.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.3e-31 140.2 212 43.9
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 4.3e-31 139.8 234 42.7
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.3e-31 139.8 249 36.9
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.1e-30 137.5 393 30.8
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 3.6e-30 136.7 224 41.5
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.6e-28 130.6 226 41.2
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.7e-28 129.4 381 31.0
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.3e-27 128.3 241 39.8
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 2.2e-27 127.5 279 35.5
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.2e-26 123.6 122 50.0
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 4.1e-26 123.2 241 36.1
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 4.1e-26 123.2 300 35.7
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.4e-26 122.9 346 34.7
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.0e-24 118.6 366 30.9
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.3e-24 118.2 84 61.9
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.5e-23 114.8 273 31.9
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 7.3e-23 112.5 240 37.5
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.6e-22 110.2 214 36.9
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 6.2e-22 109.4 262 36.3
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 2.0e-20 104.4 232 34.9
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.4e-18 97.4 271 31.7
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.0e-17 94.4 146 41.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.5e-17 93.6 72 65.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.9e-16 90.1 334 29.6
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 3.4e-12 77.0 158 34.2
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.2e-11 74.3 55 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 7.1e-10 69.3 131 35.9
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.1e-09 67.8 107 42.1
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 3.9e-08 63.5 122 33.6
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 6.6e-08 62.8 84 48.8
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 8.6e-08 62.4 90 43.3
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.1e-07 62.0 96 43.8
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 2.5e-07 60.8 73 47.9
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 3.3e-07 60.5 145 33.1
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 4.3e-07 60.1 130 39.2
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 3.6e-06 57.0 282 29.1


User provided reference genes

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