Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 6.1e-117 424.1 203 100.0
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 2.7e-80 302.4 202 73.3
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.2e-75 287.0 201 72.6
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.5e-75 286.6 207 68.6
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 2.6e-75 285.8 200 70.5
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 5.8e-75 284.6 207 68.1
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 1.7e-71 273.1 202 66.8
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 2.3e-71 272.7 205 66.3
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 6.6e-71 271.2 202 67.8
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.5e-70 270.0 203 64.0
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 2.5e-70 269.2 204 66.7
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 2.5e-70 269.2 204 66.2
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 3.3e-70 268.9 201 63.7
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 5.6e-70 268.1 206 64.1
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 5.6e-70 268.1 204 65.7
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 9.5e-70 267.3 204 63.7
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 1.2e-69 266.9 206 66.0
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.2e-69 266.9 200 66.5
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 2.1e-69 266.2 204 64.7
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 2.1e-69 266.2 208 63.9
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 3.6e-69 265.4 206 64.1
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 4.7e-69 265.0 206 64.1
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 8.1e-69 264.2 203 64.0
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.1e-68 263.8 202 65.3
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.1e-68 263.8 204 65.2
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.1e-68 263.8 204 65.2
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 1.4e-68 263.5 202 65.8
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.4e-68 263.5 202 63.9
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 1.4e-68 263.5 204 65.2
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 6.8e-68 261.2 212 64.6
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 6.8e-68 261.2 206 64.1
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 6.8e-68 261.2 206 64.6
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 3.4e-67 258.8 205 64.4
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 4.4e-67 258.5 203 62.6
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.3e-66 256.9 198 65.7
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.2e-66 256.1 218 61.0
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 2.2e-66 256.1 205 63.4
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 2.9e-66 255.8 205 63.9
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 4.9e-66 255.0 218 59.6
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 4.9e-66 255.0 201 62.7
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 8.4e-66 254.2 195 64.6
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 4.1e-65 251.9 206 63.6
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 7.1e-65 251.1 203 61.6
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.2e-64 250.4 204 62.3
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.2e-64 250.4 219 61.2
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.1e-64 249.6 202 64.4
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.1e-64 249.6 205 64.4
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 2.7e-64 249.2 204 62.3
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 4.6e-64 248.4 200 62.5
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 6.0e-64 248.1 204 61.8
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 6.0e-64 248.1 200 62.0
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 7.8e-64 247.7 204 61.8
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 1.0e-63 247.3 205 61.5
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.3e-63 246.9 206 63.6
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 3.9e-63 245.4 200 62.0
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 8.6e-63 244.2 201 60.7
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.5e-62 243.4 198 61.6
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 1.9e-62 243.0 212 59.9
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 1.9e-62 243.0 200 61.5
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.9e-62 243.0 198 61.6
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.9e-62 243.0 203 60.6
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 2.5e-62 242.7 196 62.2
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 4.3e-62 241.9 199 63.3
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 4.3e-62 241.9 201 60.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 5.6e-62 241.5 196 61.7
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.6e-61 240.0 203 59.6
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.1e-61 239.6 198 61.1
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 4.7e-61 238.4 211 59.7
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.4e-60 236.9 198 61.1
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 1.4e-60 236.9 201 59.7
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.4e-60 236.9 207 60.9
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 3.1e-60 235.7 200 60.0
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 3.1e-60 235.7 200 60.0
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 3.1e-60 235.7 202 58.9
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 4.0e-60 235.3 211 57.8
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 6.8e-60 234.6 199 60.8
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 3.4e-59 232.3 196 60.7
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 4.4e-59 231.9 191 61.8
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 4.4e-59 231.9 205 59.5
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 7.6e-59 231.1 198 61.1
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 9.9e-59 230.7 198 57.1
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 2.2e-58 229.6 209 56.0
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 2.2e-58 229.6 210 55.2
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 4.9e-58 228.4 192 60.4
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.4e-57 226.9 199 56.8
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 1.4e-57 226.9 187 60.4
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 2.4e-57 226.1 199 60.3
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 1.2e-56 223.8 196 58.7
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.6e-56 223.4 192 59.9
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.5e-56 222.2 197 57.9
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 7.8e-56 221.1 162 70.4
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 7.8e-56 221.1 185 62.2
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 1.0e-55 220.7 191 59.7
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 8.7e-55 217.6 204 54.9
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 7.3e-54 214.5 171 63.2
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 8.1e-53 211.1 223 52.9
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 9.0e-52 207.6 173 61.3
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 3.4e-51 205.7 185 57.8
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 3.6e-45 185.7 155 62.6
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 4.8e-45 185.3 170 55.9
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 4.0e-44 182.2 155 61.9
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 2.9e-42 176.0 117 70.9
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 4.2e-41 172.2 204 47.1
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 4.6e-40 168.7 231 42.4
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.1e-38 164.1 114 67.5
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.5e-38 162.9 124 67.7
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 4.3e-38 162.2 166 50.0
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 2.8e-37 159.5 156 53.8
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 3.7e-37 159.1 128 57.0
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.1e-36 157.5 219 40.6
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.0e-31 141.0 155 49.7
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 2.9e-26 122.9 110 51.8
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 1.1e-22 110.9 117 53.8
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 8.2e-21 104.8 124 49.2
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.8e-20 103.6 90 56.7
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 2.9e-18 96.3 126 46.0
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.8e-15 87.0 58 75.9
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 3.1e-12 76.3 48 68.8
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.9e-10 69.7 64 51.6
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.1e-08 63.5 63 49.2
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 1.8e-07 60.5 84 41.7
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 3.9e-07 59.3 73 39.7
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 3.3e-06 56.2 86 34.9


User provided reference genes

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