Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1703.7 843 100.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 844 82.8
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1403.7 840 83.0
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1399.4 880 79.7
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1394.4 812 84.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 844 82.7
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1389.8 843 82.7
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1387.1 838 82.5
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 840 82.1
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 840 82.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 824 83.4
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1376.3 846 81.8
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1373.2 841 81.3
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 856 81.0
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 827 83.4
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1367.4 835 82.6
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 844 80.9
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 844 81.2
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 839 81.5
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 832 81.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1362.1 844 81.5
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 827 82.7
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1360.1 844 81.4
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1359.4 839 81.0
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1357.8 839 80.6
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 873 78.6
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1355.5 823 82.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1354.3 844 81.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1353.6 844 81.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1353.2 801 83.9
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1352.8 841 80.3
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 826 82.4
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 828 82.2
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1350.5 828 82.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1349.3 828 82.4
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1349.0 842 80.6
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1347.8 845 80.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1346.6 844 80.0
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1345.5 843 80.7
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 831 79.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 841 80.3
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1342.8 827 81.4
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 845 79.3
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 827 81.6
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 821 82.1
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 829 80.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 833 81.4
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 816 83.1
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 816 82.0
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 845 80.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 837 79.6
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 816 81.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 845 80.6
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 818 81.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 827 81.4
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1332.4 818 81.5
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 845 80.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 841 80.4
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 803 82.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 821 80.3
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1328.9 843 80.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 842 80.3
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 843 79.6
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1325.1 811 80.8
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 843 79.7
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 838 80.0
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1322.4 812 82.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 845 80.1
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1318.9 852 77.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 846 78.7
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 842 78.1
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 846 78.6
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 839 79.9
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 827 80.4
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 873 76.3
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 851 75.7
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 827 79.8
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 843 77.6
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 846 77.4
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 830 78.9
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 827 79.7
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 825 80.4
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 846 78.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 838 77.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 817 80.7
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1303.5 824 80.1
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 834 79.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 838 80.0
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1302.7 843 77.7
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 816 80.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1301.2 845 73.3
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 827 79.4
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 824 78.0
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 857 76.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 818 78.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 811 79.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 830 78.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 884 74.5
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 785 82.9
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 841 77.8
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 815 78.4
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1275.8 827 77.9
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 844 78.2
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 805 78.6
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 848 76.8
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 835 76.4
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 843 76.0
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 816 79.4
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 813 78.4
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 813 78.4
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 813 78.4
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 813 78.4
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 826 77.2
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 881 74.7
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 790 80.6
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 790 80.6
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 790 80.6
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 792 80.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 911 70.8
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 827 78.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 886 71.9
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1254.6 817 77.1
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1241.9 822 76.8
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 822 76.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 793 79.7
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 793 79.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1224.9 782 80.1
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1222.2 818 76.2
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1221.8 827 75.7
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1201.4 805 74.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 843 74.1
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 818 74.0
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1182.9 693 84.6
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1181.4 759 78.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1179.1 814 72.2
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1163.3 822 74.9
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1152.9 837 72.3
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1149.0 812 72.5
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1137.1 767 74.2
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1134.0 779 73.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1133.2 735 78.9
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1123.2 817 69.9
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 3.1e-292 1008.4 608 80.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.1e-276 956.8 633 71.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.6e-267 926.4 844 61.4
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 9.9e-262 907.1 520 83.5
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.5e-259 898.7 536 85.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.0e-258 895.6 586 74.7
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.6e-182 644.0 710 53.0
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 3.6e-155 553.1 489 57.9
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.7e-142 510.4 331 74.6
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.1e-139 500.7 352 77.6
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 3.8e-128 463.4 318 77.7
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-98 365.5 395 53.2
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 5.0e-96 356.7 262 67.2
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-88 332.0 581 45.1
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.3e-59 233.4 156 76.3
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 6.1e-54 216.9 132 78.8
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.0e-44 185.3 163 56.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 7.5e-36 156.8 510 27.8
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-33 149.4 472 28.4
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.3e-31 141.0 473 27.1
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.2e-30 139.4 76 85.5
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.0e-28 132.1 477 28.3
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 5.8e-28 130.6 68 91.2
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-27 129.0 132 53.0
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 4.9e-27 127.5 435 28.5
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.0e-24 119.8 96 63.5
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 3.1e-21 108.2 61 78.7
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 9.3e-18 96.7 152 39.5
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-16 91.7 266 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.9e-16 91.3 220 32.3
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.8e-14 85.1 83 51.8
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 3.5e-09 68.2 138 33.3
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-08 64.3 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 7.3e-07 60.5 38 76.3


User provided reference genes

Program Settings