Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1366.3 651 100.0
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1162.1 651 82.0
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1152.5 653 81.6
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 0.0e+00 1144.4 650 80.3
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 0.0e+00 1140.2 650 80.2
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 0.0e+00 1140.2 651 80.8
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 0.0e+00 1136.7 646 80.8
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1135.9 645 79.8
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 0.0e+00 1132.1 651 80.8
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 0.0e+00 1129.8 640 81.2
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 0.0e+00 1129.0 659 79.8
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1120.1 642 78.8
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1117.8 652 77.3
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 0.0e+00 1117.4 681 76.1
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1115.9 649 77.0
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 0.0e+00 1114.4 723 72.9
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 0.0e+00 1113.6 668 76.5
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1111.7 650 76.5
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 651 77.1
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1109.7 651 76.0
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1109.7 643 77.9
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 649 77.7
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 652 78.7
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 639 77.2
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1104.7 651 76.5
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 651 76.3
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 650 76.3
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1102.8 651 76.3
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1100.1 651 75.9
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 647 78.5
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1094.3 651 76.2
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1093.6 651 75.4
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1093.6 651 75.9
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1092.4 651 75.6
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1092.4 651 75.7
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1092.0 651 75.9
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1091.6 650 75.7
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1091.3 613 81.6
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1090.9 651 74.8
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1090.5 651 75.9
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 0.0e+00 1087.8 643 77.9
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1087.8 646 75.5
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1087.0 647 75.9
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1085.5 696 72.0
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1084.3 638 75.4
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1084.3 651 75.0
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1084.3 655 76.0
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1081.2 639 76.5
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1079.7 645 74.6
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 0.0e+00 1079.3 638 76.8
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1078.2 646 75.2
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 0.0e+00 1076.6 650 73.8
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1075.5 650 75.1
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 4.5e-312 1074.7 641 76.1
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 2.2e-311 1071.6 649 75.2
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 6.7e-311 1070.1 651 73.9
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 8.9e-311 1069.7 653 73.2
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 1.5e-310 1068.9 641 74.9
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 5.7e-310 1067.0 597 82.1
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 7.5e-310 1066.6 652 73.8
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 7.0e-308 1060.1 613 78.8
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 1.6e-307 1058.9 669 72.0
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 4.6e-307 1057.4 635 76.2
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 4.6e-307 1057.4 637 75.4
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 1.3e-306 1055.8 646 74.5
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 1.7e-306 1055.4 791 64.5
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.4e-303 1045.8 650 72.0
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.5e-302 1042.3 651 73.0
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 2.2e-301 1038.5 652 71.9
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 1.1e-300 1036.2 805 61.7
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 2.0e-299 1031.9 594 78.1
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 3.6e-296 1021.1 650 71.5
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 2.3e-295 1018.5 656 71.0
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 4.0e-295 1017.7 636 72.2
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 2.0e-294 1015.4 647 71.1
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 2.6e-294 1015.0 636 72.0
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.6e-294 1015.0 636 72.3
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 2.6e-294 1015.0 649 70.7
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 3.4e-294 1014.6 645 71.3
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 1.4e-292 1009.2 649 71.0
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 6.0e-291 1003.8 651 69.9
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.3e-290 1002.7 636 71.5
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.3e-290 1002.7 636 71.5
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.3e-290 1002.7 636 71.5
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 2.3e-287 991.9 648 69.1
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 4.1e-284 981.1 645 69.9
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 2.3e-282 975.3 588 76.0
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.9e-277 958.4 640 68.9
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 7.9e-267 923.7 643 68.1
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 5.1e-266 921.0 558 74.0
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 4.3e-265 917.9 594 69.5
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 9.3e-260 900.2 559 71.7
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 9.3e-252 873.6 575 68.7
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 2.5e-249 865.5 639 61.5
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.2e-243 846.7 640 61.6
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 1.0e-242 843.6 638 61.0
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 2.4e-215 752.7 513 69.0
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 2.2e-192 676.4 363 81.8
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 2.3e-181 639.8 371 79.8
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 2.9e-176 622.9 378 76.7
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 7.8e-174 614.8 557 57.5
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 9.6e-164 581.3 373 70.2
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 2.4e-146 523.5 536 50.4
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.2e-121 441.4 241 79.3
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 2.7e-81 307.4 742 29.9
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 1.0e-77 295.4 152 84.9
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 1.9e-71 274.6 245 58.0
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 6.6e-56 223.0 200 54.0
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.1e-26 125.9 72 80.6
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.9e-26 125.2 73 78.1
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.1e-23 115.9 70 68.6
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.1e-23 115.9 71 66.2
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 9.6e-23 112.8 77 62.3
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.1e-21 107.8 70 64.3
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 5.8e-20 103.6 99 54.5
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 6.5e-19 100.1 69 62.3
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.1e-18 99.4 95 50.5
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 1.6e-17 95.5 81 60.5
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 1.6e-17 95.5 81 60.5
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 1.6e-17 95.5 81 60.5
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 2.7e-17 94.7 108 48.1
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.5e-12 79.0 52 61.5
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 2.2e-11 75.1 99 45.5
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 6.1e-09 67.0 69 43.5
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 3.9e-08 64.3 64 45.3


User provided reference genes

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