Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 1.5e-77 292.7 143 100.0
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.3e-22 109.4 54 85.2
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.3e-22 109.4 53 86.8
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.1e-22 109.0 55 83.6
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 3.1e-22 109.0 53 86.8
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 5.2e-22 108.2 58 79.3
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.8e-22 107.8 53 86.8
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 1.5e-21 106.7 53 83.0
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.5e-21 106.7 57 80.7
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.5e-21 106.7 57 80.7
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 1.5e-21 106.7 53 83.0
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.5e-21 106.7 53 84.9
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.0e-21 106.3 53 83.0
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 3.4e-21 105.5 54 83.3
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 4.4e-21 105.1 53 81.1
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 4.4e-21 105.1 53 84.9
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 4.4e-21 105.1 53 83.0
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 4.4e-21 105.1 54 87.0
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.8e-21 104.8 60 75.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.8e-21 104.8 57 77.2
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 7.5e-21 104.4 53 83.0
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 9.8e-21 104.0 52 84.6
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 9.8e-21 104.0 53 83.0
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.3e-20 103.6 53 83.0
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 1.3e-20 103.6 53 81.1
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.7e-20 103.2 87 59.8
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 3.7e-20 102.1 53 83.0
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 4.9e-20 101.7 60 75.0
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 6.4e-20 101.3 53 81.1
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 8.3e-20 100.9 53 79.2
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.3e-20 100.9 53 81.1
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.3e-20 100.9 53 81.1
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.1e-19 100.5 54 79.6
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 1.1e-19 100.5 53 81.1
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.4e-19 100.1 54 77.8
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.4e-19 100.1 54 77.8
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 1.4e-19 100.1 54 77.8
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.4e-19 100.1 54 77.8
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.4e-19 100.1 53 79.2
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.4e-19 99.4 53 77.4
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 2.4e-19 99.4 53 81.1
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 2.4e-19 99.4 85 56.5
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 4.1e-19 98.6 56 75.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 5.4e-19 98.2 53 75.5
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 7.0e-19 97.8 54 75.9
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 7.0e-19 97.8 54 75.9
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 1.6e-18 96.7 54 79.6
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 2.7e-18 95.9 54 79.6
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 7.8e-18 94.4 53 75.5
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 7.8e-18 94.4 53 73.6
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 7.8e-18 94.4 54 74.1
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 7.8e-18 94.4 53 79.2
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.0e-17 94.0 56 73.2
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.0e-17 94.0 56 73.2
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.3e-17 93.6 54 74.1
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.3e-17 93.6 53 75.5
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.3e-17 92.8 53 71.7
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.3e-17 92.8 53 71.7
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 2.3e-17 92.8 54 74.1
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 2.3e-17 92.8 53 71.7
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 2.3e-17 92.8 53 73.6
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.0e-17 92.4 52 76.9
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.0e-17 92.4 52 76.9
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.0e-17 92.4 52 76.9
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.0e-17 91.7 53 71.7
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 8.6e-17 90.9 53 77.4
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 8.6e-17 90.9 56 69.6
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 1.1e-16 90.5 87 50.6
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.1e-16 90.5 71 62.0
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 2.5e-16 89.4 59 71.2
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 9.5e-16 87.4 53 75.5
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.2e-15 87.0 53 71.7
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 2.1e-15 86.3 48 79.2
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 2.1e-15 86.3 67 62.7
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 4.7e-15 85.1 48 77.1
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 6.2e-15 84.7 53 69.8
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 6.2e-15 84.7 52 75.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 6.2e-15 84.7 54 72.2
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.4e-14 83.6 96 44.8
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 1.4e-14 83.6 50 74.0
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 5.2e-14 81.6 53 66.0
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 8.9e-14 80.9 46 76.1
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 2.0e-13 79.7 58 63.8
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 9.9e-13 77.4 53 67.9
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.3e-12 77.0 53 66.0
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.3e-12 77.0 53 66.0
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.3e-12 77.0 53 67.9
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 1.7e-12 76.6 53 66.0
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 2.9e-12 75.9 56 67.9
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 4.9e-12 75.1 50 72.0
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 4.9e-12 75.1 49 63.3
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.4e-11 73.6 50 68.0
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.9e-11 73.2 53 66.0
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 2.4e-11 72.8 53 64.2
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.2e-11 72.4 50 62.0
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 7.1e-11 71.2 38 81.6
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 1.2e-10 70.5 49 65.3
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 2.1e-10 69.7 87 43.7
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.5e-10 68.9 32 90.6
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.6e-10 68.6 39 74.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.7e-09 66.6 35 82.9
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 1.7e-09 66.6 44 63.6
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.3e-09 66.2 31 90.3
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 1.5e-08 63.5 50 60.0
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 2.5e-08 62.8 31 80.6
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 5.6e-08 61.6 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 7.3e-08 61.2 28 96.4
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 2.1e-07 59.7 36 75.0
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.7e-07 58.5 80 43.8
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.7e-07 58.5 80 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 6.2e-07 58.2 47 55.3
MD12G1007100 Malus domestica HOM05D006514 ORTHO05D008138 4.0e-06 55.5 34 64.7
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.0e-06 55.5 59 50.8
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 5.2e-06 55.1 40 60.0


User provided reference genes

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