Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 5.7e-74 280.8 140 100.0
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.7e-55 218.8 132 81.1
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.5e-55 218.4 134 76.9
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 7.8e-55 217.2 134 77.6
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.6e-54 214.2 131 79.4
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.6e-54 214.2 134 75.4
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-43 179.9 106 80.2
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.7e-41 172.9 136 66.2
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.4e-41 170.6 134 66.4
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 5.4e-40 167.9 136 65.4
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.6e-39 166.4 136 61.8
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.6e-39 166.4 136 61.8
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 4.6e-39 164.9 136 64.7
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 4.6e-39 164.9 136 64.7
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 4.6e-39 164.9 135 66.7
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 6.0e-39 164.5 134 64.2
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 6.0e-39 164.5 134 64.9
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 7.8e-39 164.1 122 68.0
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 7.8e-39 164.1 134 64.2
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 7.8e-39 164.1 122 67.2
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 7.8e-39 164.1 134 63.4
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 7.8e-39 164.1 122 67.2
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.3e-38 163.3 134 63.4
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.3e-38 163.3 136 62.5
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-38 163.3 136 64.0
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 1.3e-38 163.3 130 64.6
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 2.3e-38 162.5 135 63.7
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 2.3e-38 162.5 123 65.9
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 3.0e-38 162.2 137 64.2
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 3.0e-38 162.2 134 61.9
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 3.9e-38 161.8 121 69.4
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 3.9e-38 161.8 130 63.8
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 3.9e-38 161.8 121 68.6
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 5.1e-38 161.4 123 65.9
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 5.1e-38 161.4 136 61.8
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.1e-38 161.4 134 62.7
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 8.7e-38 160.6 125 64.0
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 8.7e-38 160.6 120 66.7
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 8.7e-38 160.6 123 65.9
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 8.7e-38 160.6 136 61.8
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 8.7e-38 160.6 136 62.5
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 1.1e-37 160.2 129 64.3
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 1.5e-37 159.8 122 65.6
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 1.5e-37 159.8 123 66.7
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.5e-37 159.8 135 60.7
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.5e-37 159.8 121 65.3
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.5e-37 159.8 134 61.9
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.5e-37 159.1 122 65.6
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.5e-37 159.1 122 65.6
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 2.5e-37 159.1 122 65.6
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.5e-37 159.1 126 64.3
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.5e-37 159.1 132 64.4
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 2.5e-37 159.1 125 64.0
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 3.3e-37 158.7 122 66.4
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 3.3e-37 158.7 125 65.6
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 3.3e-37 158.7 121 66.1
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 3.3e-37 158.7 121 67.8
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 3.3e-37 158.7 121 66.9
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 4.3e-37 158.3 125 64.0
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 4.3e-37 158.3 122 66.4
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 7.3e-37 157.5 122 68.0
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 7.3e-37 157.5 121 66.9
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 7.3e-37 157.5 121 66.9
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.6e-37 157.1 137 59.9
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 9.6e-37 157.1 122 66.4
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 9.6e-37 157.1 121 68.6
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.3e-36 156.8 125 64.0
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 1.3e-36 156.8 138 58.0
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 1.3e-36 156.8 123 65.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.6e-36 156.4 122 67.2
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.6e-36 156.4 122 66.4
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 1.6e-36 156.4 122 65.6
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 2.1e-36 156.0 134 61.2
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 2.1e-36 156.0 120 67.5
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 2.8e-36 155.6 128 63.3
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 2.8e-36 155.6 128 63.3
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 3.6e-36 155.2 121 66.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 4.8e-36 154.8 121 65.3
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 6.2e-36 154.5 120 64.2
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 6.2e-36 154.5 121 64.5
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 8.1e-36 154.1 122 64.8
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 8.1e-36 154.1 121 65.3
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.4e-35 153.3 122 64.8
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.4e-35 153.3 121 62.8
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.4e-35 153.3 121 64.5
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.4e-35 153.3 129 62.8
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 1.4e-35 153.3 120 67.5
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.4e-35 153.3 121 65.3
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 2.4e-35 152.5 119 67.2
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 2.4e-35 152.5 122 64.8
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 2.4e-35 152.5 124 62.1
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 4.0e-35 151.8 120 65.0
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 4.0e-35 151.8 123 61.8
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 5.3e-35 151.4 122 60.7
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 5.3e-35 151.4 123 61.8
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 6.9e-35 151.0 89 79.8
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 9.0e-35 150.6 118 66.1
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.2e-34 150.2 116 65.5
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 2.0e-34 149.4 132 59.8
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 2.6e-34 149.1 122 63.9
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.6e-34 149.1 123 63.4
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.6e-34 149.1 123 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 4.5e-34 148.3 124 63.7
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 4.5e-34 148.3 132 59.8
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 7.6e-34 147.5 121 61.2
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 9.9e-34 147.1 132 58.3
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 9.9e-34 147.1 130 60.8
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 9.9e-34 147.1 130 59.2
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 9.9e-34 147.1 121 62.8
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 2.2e-33 146.0 129 58.9
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 4.9e-33 144.8 122 61.5
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.9e-33 144.8 120 60.8
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 8.4e-33 144.1 121 62.0
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 2.4e-32 142.5 120 62.5
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 3.2e-32 142.1 120 61.7
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.2e-32 141.7 156 51.9
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 4.2e-32 141.7 120 61.7
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 5.4e-32 141.4 120 59.2
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.6e-31 139.8 137 56.9
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 6.0e-31 137.9 122 59.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.8e-30 136.3 150 54.0
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 5.1e-30 134.8 120 60.0
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.5e-29 133.3 148 53.4
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.5e-29 132.5 105 64.8
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 7.4e-29 131.0 121 58.7
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 3.6e-28 128.6 120 57.5
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 1.4e-27 126.7 120 55.0
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.0e-22 109.0 132 47.7
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 2.5e-21 105.9 118 50.8
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 3.3e-21 105.5 117 48.7
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 8.1e-20 100.9 120 42.5
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.8e-19 99.8 119 48.7
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.2e-15 87.0 74 60.8
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 3.5e-15 85.5 63 65.1
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 6.0e-15 84.7 78 57.7
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 7.9e-15 84.3 118 46.6
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 5.1e-14 81.6 68 58.8
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 5.1e-14 81.6 78 55.1
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.5e-13 80.1 69 58.0
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.9e-13 79.7 76 57.9
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 9.6e-13 77.4 64 60.9
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 9.6e-13 77.4 73 54.8
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.8e-12 75.9 58 65.5
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 2.8e-12 75.9 60 63.3
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 6.3e-12 74.7 60 61.7
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 8.2e-12 74.3 59 61.0
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 8.2e-12 74.3 70 57.1
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 1.1e-11 73.9 96 44.8
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.8e-11 73.2 69 56.5
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 2.4e-11 72.8 69 55.1
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 2.4e-11 72.8 71 52.1
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.1e-11 72.0 58 62.1
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 6.9e-11 71.2 65 55.4
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 7.2e-08 61.2 55 50.9
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 9.3e-08 60.8 68 50.0
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 7.9e-07 57.8 122 33.6
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 7.9e-07 57.8 56 53.6
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 5.1e-06 55.1 118 36.4


User provided reference genes

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