Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 3.7e-129 464.9 243 100.0
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 1.3e-65 253.8 233 62.7
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 6.5e-65 251.5 239 59.0
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 1.6e-63 246.9 244 58.6
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 2.1e-63 246.5 233 58.8
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 4.6e-63 245.4 233 58.8
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 6.1e-63 245.0 223 59.2
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 1.0e-62 244.2 235 58.7
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.0e-62 244.2 235 58.7
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.4e-62 243.8 240 60.0
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.8e-62 243.4 238 58.8
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 2.3e-62 243.0 232 61.2
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 2.3e-62 243.0 241 56.0
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 3.9e-62 242.3 199 65.3
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 5.1e-62 241.9 238 55.9
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 8.8e-62 241.1 241 58.1
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 8.8e-62 241.1 247 59.1
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.1e-61 240.7 246 58.1
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.5e-61 240.4 228 57.0
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 2.0e-61 240.0 228 56.1
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 3.3e-61 239.2 229 58.5
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 7.4e-61 238.0 238 58.0
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 1.3e-60 237.3 217 59.4
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 1.7e-60 236.9 255 56.9
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 2.2e-60 236.5 192 64.1
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 4.8e-60 235.3 194 64.4
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 8.2e-60 234.6 199 62.8
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 1.1e-59 234.2 192 63.0
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 1.4e-59 233.8 240 57.5
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.4e-59 233.8 227 56.8
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 4.1e-59 232.3 239 56.5
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 5.3e-59 231.9 232 57.8
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 5.9e-58 228.4 163 70.6
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 7.7e-58 228.0 240 56.2
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 2.2e-57 226.5 237 52.7
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 2.9e-57 226.1 236 57.6
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 6.5e-57 224.9 220 55.0
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 1.4e-56 223.8 175 62.3
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 2.5e-56 223.0 228 55.3
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 2.5e-56 223.0 227 56.8
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 4.2e-56 222.2 228 55.3
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 4.2e-56 222.2 226 57.1
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 9.4e-56 221.1 225 54.7
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 2.1e-55 219.9 299 48.5
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 2.7e-55 219.5 219 53.4
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 4.7e-55 218.8 223 54.3
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 7.9e-55 218.0 229 55.9
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.0e-54 217.6 243 52.3
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 1.0e-54 217.6 244 52.0
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 1.4e-54 217.2 232 53.9
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 2.3e-54 216.5 240 55.4
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 2.3e-54 216.5 227 55.5
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 6.7e-54 214.9 204 56.9
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 6.7e-54 214.9 230 56.5
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 1.1e-53 214.2 226 53.1
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 1.1e-53 214.2 234 52.6
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 2.0e-53 213.4 222 54.1
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 2.6e-53 213.0 226 52.7
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 2.6e-53 213.0 227 55.1
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 4.4e-53 212.2 229 53.3
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 4.4e-53 212.2 165 64.8
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 4.4e-53 212.2 223 52.9
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 4.4e-53 212.2 247 54.3
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 1.3e-52 210.7 229 53.3
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 3.7e-52 209.1 223 52.9
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 3.7e-52 209.1 237 51.5
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 4.8e-52 208.8 223 52.9
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 8.2e-52 208.0 228 54.4
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 1.4e-51 207.2 223 52.9
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 2.4e-51 206.5 223 52.5
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 2.4e-51 206.5 245 52.2
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 2.4e-51 206.5 244 51.2
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 5.3e-51 205.3 223 52.9
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 7.0e-51 204.9 206 59.2
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 9.1e-51 204.5 198 57.1
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 2.0e-50 203.4 223 52.5
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 2.0e-50 203.4 176 60.2
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 7.7e-50 201.4 223 50.2
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 2.2e-49 199.9 232 50.9
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 1.9e-48 196.8 218 55.5
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 9.4e-48 194.5 216 54.2
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 2.3e-46 189.9 203 52.2
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 2.9e-41 172.9 191 55.5
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.8e-41 172.6 194 49.5
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 6.5e-41 171.8 194 49.0
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.1e-40 171.0 243 43.6
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 4.2e-40 169.1 174 50.0
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 2.3e-38 163.3 241 42.3
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 4.0e-38 162.5 179 52.5
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 8.8e-38 161.4 200 48.0
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 3.5e-34 149.4 122 63.1
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 4.5e-34 149.1 173 45.1
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 7.7e-34 148.3 236 40.3
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.5e-33 145.2 122 62.3
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 1.1e-32 144.4 131 56.5
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 8.0e-31 138.3 170 45.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 5.4e-27 125.6 94 67.0
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.7e-26 121.7 134 49.3
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 7.2e-24 115.2 89 66.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.8e-23 113.2 89 66.3
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 4.9e-20 102.4 113 49.6
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 1.8e-19 100.5 221 32.6
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 9.2e-19 98.2 97 56.7
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 2.9e-17 93.2 109 47.7
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 7.8e-10 68.6 53 54.7
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 2.3e-06 57.0 62 56.5


User provided reference genes

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