Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 2.9e-79 298.5 151 100.0
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 5.1e-44 181.4 151 63.6
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 1.8e-41 172.9 151 62.3
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.2e-38 162.2 157 56.7
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.2e-37 160.2 159 56.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 3.9e-36 155.2 153 56.2
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.9e-35 152.9 151 53.0
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.3e-35 152.1 143 57.3
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 4.3e-35 151.8 132 59.8
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 7.4e-35 151.0 155 56.8
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 6.3e-34 147.9 154 54.5
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.1e-33 147.1 154 54.5
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.8e-33 146.4 150 53.3
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 2.4e-33 146.0 132 59.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.1e-33 145.6 142 52.8
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.1e-33 145.2 151 55.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 6.9e-33 144.4 154 53.9
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.0e-31 140.6 140 56.4
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.7e-31 139.8 146 52.1
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 3.8e-31 138.7 145 51.7
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 5.0e-31 138.3 140 52.1
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 5.0e-31 138.3 141 53.9
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.1e-30 137.1 151 47.0
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.4e-30 136.7 147 53.1
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 4.2e-30 135.2 154 50.6
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 1.2e-29 133.7 148 52.0
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.7e-29 132.5 140 52.9
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.4e-28 130.2 140 52.1
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.0e-28 129.0 140 52.1
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 3.0e-28 129.0 140 52.1
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 3.9e-28 128.6 152 49.3
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 3.9e-28 128.6 145 48.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 3.9e-28 128.6 140 50.7
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 5.1e-28 128.3 142 50.7
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.1e-28 128.3 133 53.4
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.1e-28 128.3 133 53.4
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 6.7e-28 127.9 138 49.3
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 8.8e-28 127.5 119 56.3
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 8.8e-28 127.5 144 51.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 1.1e-27 127.1 115 57.4
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 5.7e-27 124.8 140 49.3
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 5.7e-27 124.8 140 50.7
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.4e-27 124.4 144 47.2
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 9.7e-27 124.0 140 50.7
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.2e-26 122.9 144 46.5
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-26 122.9 144 46.5
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 2.2e-26 122.9 144 49.3
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 2.8e-26 122.5 146 50.7
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.8e-26 122.5 147 50.3
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 3.7e-26 122.1 142 49.3
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 3.7e-26 122.1 146 47.3
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 3.7e-26 122.1 146 47.3
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 4.8e-26 121.7 140 49.3
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 6.3e-26 121.3 117 53.0
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 8.2e-26 120.9 145 50.3
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.1e-25 120.6 140 51.4
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.4e-25 120.2 158 50.6
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 1.4e-25 120.2 144 50.0
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 4.1e-25 118.6 138 50.0
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.1e-25 118.6 140 47.1
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 4.1e-25 118.6 140 47.1
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 5.3e-25 118.2 137 50.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 5.3e-25 118.2 141 48.9
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 6.9e-25 117.9 150 46.0
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 9.1e-25 117.5 142 45.8
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 9.1e-25 117.5 140 52.1
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-24 117.1 140 45.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 2.0e-24 116.3 145 49.0
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 3.4e-24 115.5 137 48.9
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.5e-24 115.2 139 45.3
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 5.9e-24 114.8 139 50.4
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.0e-23 114.0 143 51.7
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.3e-23 113.6 157 49.0
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 2.2e-23 112.8 159 46.5
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.2e-23 112.8 148 48.6
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 2.2e-23 112.8 140 49.3
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 2.2e-23 112.8 144 45.8
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 2.9e-23 112.5 139 44.6
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.9e-23 112.5 139 46.0
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.9e-23 112.5 148 48.0
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 8.5e-23 110.9 155 47.7
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.1e-22 110.5 148 47.3
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.9e-22 109.8 140 48.6
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 4.2e-22 108.6 140 45.7
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 5.5e-22 108.2 137 48.9
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 9.4e-22 107.5 144 45.8
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 2.1e-21 106.3 138 50.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 2.7e-21 105.9 117 53.0
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.6e-21 105.5 148 44.6
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 7.9e-21 104.4 143 44.8
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 7.9e-21 104.4 122 46.7
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.0e-20 104.0 139 47.5
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.0e-20 102.4 105 55.2
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.6e-19 99.4 118 46.6
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.6e-19 99.4 117 48.7
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 5.7e-19 98.2 136 47.8
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 9.7e-19 97.4 165 40.0
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 2.8e-18 95.9 154 42.2
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 2.8e-18 95.9 110 52.7
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 3.7e-18 95.5 132 43.9
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 4.8e-18 95.1 160 41.9
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 8.2e-18 94.4 91 53.8
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.4e-17 93.6 154 41.6
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.8e-17 93.2 139 46.0
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.2e-16 90.5 134 44.8
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.2e-16 90.5 144 41.0
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.6e-16 90.1 140 35.7
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.6e-16 90.1 135 37.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.0e-16 89.7 137 43.1
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 2.6e-16 89.4 135 45.9
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 3.5e-16 89.0 146 41.8
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.9e-16 88.2 149 40.9
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 7.7e-16 87.8 149 40.9
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.0e-15 87.4 157 37.6
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.3e-15 87.0 135 44.4
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.3e-15 87.0 126 41.3
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.7e-15 86.7 108 48.1
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.9e-15 85.9 144 40.3
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 2.9e-15 85.9 142 40.8
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.9e-15 85.9 148 41.9
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 3.8e-15 85.5 135 44.4
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 8.5e-15 84.3 135 42.2
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 8.5e-15 84.3 135 42.2
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.1e-14 84.0 141 41.8
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.5e-14 83.6 102 47.1
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.5e-14 83.6 135 42.2
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 1.5e-14 83.6 97 55.7
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.9e-14 83.2 139 40.3
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 1.9e-14 83.2 150 41.3
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.5e-14 82.8 135 41.5
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 7.2e-14 81.3 135 40.7
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 9.4e-14 80.9 147 39.5
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 9.4e-14 80.9 138 39.9
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.1e-13 79.7 152 36.2
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.7e-13 79.3 149 40.9
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 6.1e-13 78.2 136 41.2
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.8e-12 76.6 132 39.4
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.8e-12 76.6 144 38.2
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.8e-12 76.6 163 36.2
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.0e-12 75.9 145 39.3
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 4.0e-12 75.5 136 41.2
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.0e-12 75.5 148 39.9
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 4.0e-12 75.5 99 49.5
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 4.0e-12 75.5 135 40.0
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 5.2e-12 75.1 132 37.1
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.2e-12 75.1 143 37.8
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 5.2e-12 75.1 130 36.9
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.5e-11 73.6 77 54.5
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 3.3e-11 72.4 102 47.1
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 3.3e-11 72.4 102 47.1
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 4.4e-11 72.0 110 44.5
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.4e-11 72.0 142 35.2
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 5.7e-11 71.6 58 60.3
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.3e-10 70.5 64 56.2
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.8e-10 69.3 105 44.8
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 3.7e-10 68.9 132 37.1
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.8e-09 66.6 133 31.6
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.1e-09 65.9 137 32.8
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.1e-09 65.5 137 34.3
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.1e-09 65.5 137 32.1
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.3e-09 65.1 139 33.1
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 9.1e-09 64.3 138 32.6
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.7e-08 62.8 136 30.9
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.3e-07 60.5 40 67.5
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.2e-07 59.7 157 29.9
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.2e-07 59.7 149 31.5
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 2.9e-07 59.3 156 29.5
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.8e-07 58.9 79 46.8
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.5e-07 58.2 161 30.4
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.5e-06 57.0 145 31.7


User provided reference genes

Program Settings