Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02470 Coffea canephora HOM05D000697 ORTHO05D010185 1.5e-14 81.6 42 100.0
Gohir.A06G007100 Gossypium hirsutum HOM05D000697 ORTHO05D010185 4.5e-14 80.1 42 97.6
Gohir.D05G194400 Gossypium hirsutum HOM05D000697 ORTHO05D010185 4.5e-14 80.1 42 97.6
Potri.002G032000 Populus trichocarpa HOM05D000697 ORTHO05D010185 4.5e-14 80.1 42 97.6
Thecc.08G033000 Theobroma cacao HOM05D000697 ORTHO05D010185 4.5e-14 80.1 42 97.6
CiPaw.07G157300 Carya illinoinensis HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
CiPaw.08G060300 Carya illinoinensis HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Glyma.14G071500 Glycine max HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Glyma.17G253132 Glycine max HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Lalb_Chr14g0369491 Lupinus albus HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Manes.05G155332 Manihot esculenta HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Manes.18G021001 Manihot esculenta HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Phvul.001G011900 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 9.9e-14 79.0 42 95.2
Gohir.D11G188600 Gossypium hirsutum HOM05D000697 ORTHO05D010185 2.2e-13 77.8 42 95.2
Potri.005G231250 Populus trichocarpa HOM05D000697 ORTHO05D010185 2.9e-13 77.4 41 92.7
Carub.0002s2224 Capsella rubella HOM05D000697 ORTHO05D010185 3.8e-13 77.0 42 92.9
CARHR068750 Cardamine hirsuta HOM05D000697 ORTHO05D010185 3.8e-13 77.0 42 92.9
Prupe.1G374500 Prunus persica HOM05D000697 ORTHO05D010185 4.9e-13 76.6 42 90.5
CiPaw.08G138600 Carya illinoinensis HOM05D000697 ORTHO05D010185 6.4e-13 76.3 42 92.9
Gohir.D01G102800 Gossypium hirsutum HOM05D000697 ORTHO05D010185 8.4e-13 75.9 40 95.0
Gohir.D02G095800 Gossypium hirsutum HOM05D000697 ORTHO05D010185 1.1e-12 75.5 41 92.7
Gohir.A12G062300 Gossypium hirsutum HOM05D000697 ORTHO05D010185 1.4e-12 75.1 42 90.5
Thecc.01G028200 Theobroma cacao HOM05D000697 ORTHO05D010185 1.4e-12 75.1 42 90.5
CiPaw.07G050800 Carya illinoinensis HOM05D000697 ORTHO05D010185 1.9e-12 74.7 42 90.5
Migut.N00473 Erythranthe guttata HOM05D000697 ORTHO05D010185 4.2e-12 73.6 42 90.5
Gorai.007G200600 Gossypium raimondii HOM05D000697 ORTHO05D000169 4.2e-12 73.6 39 94.9
arahy.Tifrunner.gnm1.ann1.T95EUW Arachis hypogaea HOM05D000697 ORTHO05D010185 5.5e-12 73.2 38 94.7
Manes.02G097800 Manihot esculenta HOM05D000697 ORTHO05D010185 5.5e-12 73.2 42 88.1
Prupe.7G160500 Prunus persica HOM05D000697 ORTHO05D010185 7.1e-12 72.8 42 85.7
Migut.C00767 Erythranthe guttata HOM05D000697 ORTHO05D010185 1.2e-11 72.0 39 92.3
FAN27G0060 Fragaria x ananassa HOM05D000697 ORTHO05D010185 2.1e-11 71.2 39 87.2
vmacro04298 Vaccinium macrocarpon HOM05D000697 ORTHO05D010185 2.1e-11 71.2 38 92.1
Glyma.05G157100 Glycine max HOM05D000697 ORTHO05D010185 2.7e-11 70.9 41 87.8
Glyma.08G115251 Glycine max HOM05D000697 ORTHO05D010185 2.7e-11 70.9 41 87.8
Phvul.002G237700 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 2.7e-11 70.9 41 87.8
CAN.G358.36 Capsicum annuum HOM05D000697 ORTHO05D010185 3.5e-11 70.5 42 83.3
Gohir.A11G181800 Gossypium hirsutum HOM05D000697 ORTHO05D000169 3.5e-11 70.5 39 89.7
FAN15G1852 Fragaria x ananassa HOM05D000697 ORTHO05D000169 4.6e-11 70.1 39 87.2
FAN19G2851 Fragaria x ananassa HOM05D000697 ORTHO05D000169 7.9e-11 69.3 38 89.5
FAN26G2107 Fragaria x ananassa HOM05D000697 ORTHO05D000169 7.9e-11 69.3 38 89.5
FAN28G2503 Fragaria x ananassa HOM05D000697 ORTHO05D000169 7.9e-11 69.3 38 89.5
ClCG05G018700 Citrullus lanatus HOM05D000697 ORTHO05D010185 1.0e-10 68.9 39 84.6
FAN26G2173 Fragaria x ananassa HOM05D000697 ORTHO05D010185 1.0e-10 68.9 39 84.6
SGA_v2.0_scaffold11G05844 Striga asiatica HOM05D000697 ORTHO05D010185 1.8e-10 68.2 41 85.4
Eucgr.I02397 Eucalyptus grandis HOM05D000697 ORTHO05D010185 3.0e-10 67.4 41 82.9
MBI10_g00750_MAGBIO Magnolia biondii HOM05D000697 ORTHO05D000169 3.0e-10 67.4 38 84.2
CAN.G1373.26 Capsicum annuum HOM05D000697 ORTHO05D010185 3.9e-10 67.0 42 81.0
CAN.G568.4 Capsicum annuum HOM05D000697 ORTHO05D010185 3.9e-10 67.0 42 78.6
Potri.007G020000 Populus trichocarpa HOM05D000697 ORTHO05D010185 3.9e-10 67.0 42 81.0
ClCG01G019930 Citrullus lanatus HOM05D000697 ORTHO05D010185 5.1e-10 66.6 41 85.4
Gohir.A05G190900 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.7e-10 66.2 35 97.1
Gohir.D06G003300 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.7e-10 66.2 35 97.1
Gorai.009G199300 Gossypium raimondii HOM05D000697 ORTHO05D000169 6.7e-10 66.2 35 97.1
Gorai.010G008000 Gossypium raimondii HOM05D000697 ORTHO05D000169 6.7e-10 66.2 35 97.1
Lalb_Chr23g0266511 Lupinus albus HOM05D000697 ORTHO05D010185 1.1e-09 65.5 41 75.6
Manes.11G084900 Manihot esculenta HOM05D000697 ORTHO05D010185 1.5e-09 65.1 42 76.2
Aa31LG8G15820 Aethionema arabicum HOM05D000697 ORTHO05D010185 1.9e-09 64.7 38 81.6
Gorai.005G109600 Gossypium raimondii HOM05D000697 ORTHO05D000169 1.9e-09 64.7 35 94.3
Gohir.A01G114100 Gossypium hirsutum HOM05D000697 ORTHO05D000169 2.5e-09 64.3 35 94.3
Gorai.002G126500 Gossypium raimondii HOM05D000697 ORTHO05D000169 2.5e-09 64.3 35 94.3
Manes.04G074110 Manihot esculenta HOM05D000697 ORTHO05D010185 2.5e-09 64.3 42 76.2
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 3.3e-09 63.9 37 83.8
Potri.009G119650 Populus trichocarpa HOM05D000697 ORTHO05D010185 3.3e-09 63.9 42 76.2
BolC3t18161H Brassica oleracea HOM05D000697 ORTHO05D010185 5.6e-09 63.2 42 76.2
BraA06t26266Z Brassica rapa HOM05D000697 ORTHO05D010185 5.6e-09 63.2 42 76.2
Carub.0003s3231 Capsella rubella HOM05D000697 ORTHO05D010185 5.6e-09 63.2 42 76.2
CAN.G1544.1 Capsicum annuum HOM05D000697 ORTHO05D010185 5.6e-09 63.2 42 73.8
Migut.H02516 Erythranthe guttata HOM05D000697 ORTHO05D010185 5.6e-09 63.2 42 76.2
Potri.005G119400 Populus trichocarpa HOM05D000697 ORTHO05D010185 5.6e-09 63.2 43 79.1
Lalb_Chr11g0062211 Lupinus albus HOM05D000697 ORTHO05D010185 7.4e-09 62.8 40 80.0
MD08G1025800 Malus domestica HOM05D000697 ORTHO05D000169 7.4e-09 62.8 35 88.6
MD15G1022500 Malus domestica HOM05D000697 ORTHO05D000169 7.4e-09 62.8 35 88.6
Potri.004G158150 Populus trichocarpa HOM05D000697 ORTHO05D010185 7.4e-09 62.8 42 73.8
Thecc.02G081000 Theobroma cacao HOM05D000697 ORTHO05D010185 1.6e-08 61.6 42 73.8
CiPaw.05G068000 Carya illinoinensis HOM05D000697 ORTHO05D010185 2.1e-08 61.2 42 73.8
Gohir.D12G062100 Gossypium hirsutum HOM05D000697 ORTHO05D000169 2.1e-08 61.2 35 88.6
Gorai.008G065300 Gossypium raimondii HOM05D000697 ORTHO05D000169 2.1e-08 61.2 35 88.6
Carub.0007s0570 Capsella rubella HOM05D000697 ORTHO05D010185 2.8e-08 60.8 43 72.1
CiPaw.06G133300 Carya illinoinensis HOM05D000697 ORTHO05D010185 2.8e-08 60.8 42 73.8
FAN20G0406 Fragaria x ananassa HOM05D000697 ORTHO05D000169 2.8e-08 60.8 40 75.0
FAN24G3114 Fragaria x ananassa HOM05D000697 ORTHO05D000169 2.8e-08 60.8 40 75.0
FAN27G3145 Fragaria x ananassa HOM05D000697 ORTHO05D000169 2.8e-08 60.8 40 75.0
Lj4g0025152 Lotus japonicus HOM05D000697 ORTHO05D000169 2.8e-08 60.8 37 81.1
Glyma.11G114900 Glycine max HOM05D000697 ORTHO05D010185 3.7e-08 60.5 42 71.4
Glyma.12G040700 Glycine max HOM05D000697 ORTHO05D010185 3.7e-08 60.5 42 71.4
HanXRQChr09g0269581 Helianthus annuus HOM05D000697 ORTHO05D000169 3.7e-08 60.5 35 88.6
Phvul.009G005900 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 3.7e-08 60.5 42 71.4
Prupe.8G091700 Prunus persica HOM05D000697 ORTHO05D010185 3.7e-08 60.5 42 76.2
Sed0018930 Sechium edule HOM05D000697 ORTHO05D000169 3.7e-08 60.5 36 86.1
BolC9t54271H Brassica oleracea HOM05D000697 ORTHO05D010185 4.8e-08 60.1 42 73.8
BraA07t28050Z Brassica rapa HOM05D000697 ORTHO05D010185 4.8e-08 60.1 42 73.8
BraA09t36820Z Brassica rapa HOM05D000697 ORTHO05D010185 4.8e-08 60.1 42 73.8
MD05G1062200 Malus domestica HOM05D000697 ORTHO05D000169 4.8e-08 60.1 40 75.0
Gohir.D02G217700 Gossypium hirsutum HOM05D000697 ORTHO05D010185 1.8e-07 58.2 42 71.4
Glyma.04G010400 Glycine max HOM05D000697 ORTHO05D010185 3.1e-07 57.4 42 69.0
Phvul.009G060950 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 3.1e-07 57.4 43 76.7
FAN15G1563 Fragaria x ananassa HOM05D000697 ORTHO05D000169 4.0e-07 57.0 40 72.5
Phvul.011G042700 Phaseolus vulgaris HOM05D000697 ORTHO05D010185 5.3e-07 56.6 42 66.7
Migut.B00215 Erythranthe guttata HOM05D000697 ORTHO05D010185 6.9e-07 56.2 35 68.6
Gohir.A04G124500 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.9e-07 56.2 36 75.0
Gohir.D04G166600 Gossypium hirsutum HOM05D000697 ORTHO05D000169 6.9e-07 56.2 36 75.0
Gorai.012G155000 Gossypium raimondii HOM05D000697 ORTHO05D000169 6.9e-07 56.2 36 75.0
Glyma.06G010300 Glycine max HOM05D000697 ORTHO05D010185 9.0e-07 55.8 43 69.8
MD02G1140600 Malus domestica HOM05D000697 ORTHO05D000169 9.0e-07 55.8 35 82.9
MD15G1253800 Malus domestica HOM05D000697 ORTHO05D000169 2.0e-06 54.7 35 80.0
Sed0017070 Sechium edule HOM05D000697 ORTHO05D000169 2.6e-06 54.3 32 84.4


User provided reference genes

Program Settings