Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 2.6e-86 322.0 164 100.0
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 1.4e-66 256.5 150 84.0
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.8e-66 256.1 153 79.1
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.2e-66 254.6 154 81.8
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 7.5e-65 250.8 157 77.1
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 7.5e-65 250.8 155 76.8
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.8e-64 248.8 149 79.9
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.7e-64 248.4 151 78.8
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.7e-64 248.4 160 73.1
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 6.3e-64 247.7 151 78.8
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.4e-63 246.5 153 77.1
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.4e-63 246.5 153 77.1
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.8e-63 246.1 157 74.5
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 5.3e-63 244.6 153 77.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 5.3e-63 244.6 151 76.8
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 7.0e-63 244.2 150 78.0
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 7.0e-63 244.2 151 76.8
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.7e-62 242.3 155 74.8
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 4.5e-62 241.5 157 73.2
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 7.7e-62 240.7 151 75.5
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 7.7e-62 240.7 151 76.2
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 1.0e-61 240.4 150 75.3
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.3e-61 240.0 156 72.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.3e-61 240.0 151 76.2
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 5.0e-61 238.0 150 71.3
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.0e-61 238.0 153 72.5
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 5.0e-61 238.0 150 74.7
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 5.0e-61 238.0 149 75.2
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 6.5e-61 237.7 150 73.3
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.5e-60 236.5 157 74.5
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 1.9e-60 236.1 155 69.7
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.9e-60 236.1 152 73.7
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.5e-60 235.7 152 73.7
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.5e-60 235.7 152 73.7
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.5e-60 235.7 152 73.7
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 4.2e-60 235.0 149 75.2
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.2e-60 235.0 150 73.3
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 4.2e-60 235.0 155 72.3
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 7.2e-60 234.2 150 74.7
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 9.4e-60 233.8 153 73.9
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 9.4e-60 233.8 152 71.7
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.2e-59 233.4 151 73.5
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.6e-59 233.0 150 73.3
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.1e-59 232.6 155 73.5
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.1e-59 232.6 147 74.1
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 2.1e-59 232.6 155 71.0
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 6.1e-59 231.1 149 73.2
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 6.1e-59 231.1 151 74.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.4e-58 229.9 145 74.5
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.3e-58 229.2 146 72.6
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 3.0e-58 228.8 155 69.7
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 4.0e-58 228.4 151 72.2
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 6.8e-58 227.6 152 70.4
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 6.8e-58 227.6 155 67.1
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 8.8e-58 227.3 153 69.3
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 8.8e-58 227.3 146 74.7
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 8.8e-58 227.3 146 74.7
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 8.8e-58 227.3 156 69.9
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.5e-57 226.5 150 71.3
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.5e-57 226.5 152 70.4
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.5e-57 226.5 146 73.3
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 3.4e-57 225.3 151 70.9
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 4.4e-57 224.9 155 68.4
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.7e-57 224.6 156 69.9
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 7.5e-57 224.2 147 70.7
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 9.8e-57 223.8 152 71.7
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.3e-56 223.4 155 67.7
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.3e-56 223.4 153 70.6
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 1.3e-56 223.4 147 71.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.7e-56 223.0 155 67.7
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.7e-56 223.0 150 70.7
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.7e-56 223.0 159 66.0
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.2e-56 222.6 153 69.9
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.2e-56 222.6 154 68.8
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.2e-56 222.6 146 72.6
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 6.3e-56 221.1 151 68.2
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 6.3e-56 221.1 155 66.5
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.1e-55 220.3 156 68.6
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.8e-55 219.5 151 70.9
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 2.4e-55 219.2 151 67.5
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.1e-55 218.8 152 67.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.1e-55 218.4 151 70.2
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 5.4e-55 218.0 151 66.2
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 5.4e-55 218.0 151 66.2
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 5.4e-55 218.0 151 66.2
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 9.1e-55 217.2 149 68.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 9.1e-55 217.2 149 70.5
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 9.1e-55 217.2 146 74.7
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.7e-54 215.7 151 65.6
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 3.5e-54 215.3 146 70.5
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 4.5e-54 214.9 151 64.9
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 4.5e-54 214.9 151 64.9
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 4.5e-54 214.9 150 70.7
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 5.9e-54 214.5 147 70.1
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.7e-53 213.0 148 66.9
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.7e-53 213.0 152 65.8
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.3e-53 212.6 212 56.6
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.9e-53 212.2 155 64.5
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.1e-52 210.3 147 68.0
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.5e-52 209.9 153 64.1
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 4.2e-52 208.4 147 66.7
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 9.5e-52 207.2 150 64.0
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.6e-51 205.3 148 64.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 3.6e-51 205.3 148 64.2
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.8e-50 203.0 152 61.8
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.0e-50 201.8 155 62.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.2e-49 200.3 152 61.8
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 3.4e-49 198.7 152 59.9
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 3.4e-49 198.7 152 59.9
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 3.4e-49 198.7 152 59.9
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 3.4e-49 198.7 152 59.9
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 3.4e-49 198.7 152 59.9
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.4e-49 198.4 152 61.2
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 4.4e-49 198.4 152 59.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 5.7e-49 198.0 147 62.6
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 9.8e-49 197.2 152 59.9
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.8e-49 197.2 151 64.9
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.8e-49 197.2 151 64.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.2e-46 190.3 126 69.0
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 5.9e-46 188.0 154 54.5
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.1e-44 183.7 122 68.9
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.5e-44 183.3 153 59.5
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.5e-44 183.3 153 59.5
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.0e-42 177.2 150 60.7
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.0e-42 175.3 114 71.9
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 8.9e-42 174.1 119 66.4
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.5e-41 173.3 119 68.1
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.5e-41 173.3 139 54.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.7e-40 169.9 116 69.8
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 1.7e-40 169.9 149 57.0
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.1e-39 167.2 168 53.0
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.4e-39 166.8 119 62.2
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 7.8e-38 161.0 125 56.8
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.0e-37 160.6 147 49.7
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.0e-37 160.6 138 57.2
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 3.9e-37 158.7 154 47.4
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.9e-37 158.7 155 54.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.2e-34 148.3 122 60.7
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 3.4e-33 145.6 107 64.5
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 3.4e-33 145.6 87 74.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 5.8e-33 144.8 152 48.7
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 3.2e-31 139.0 90 72.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 2.1e-30 136.3 141 49.6
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.6e-30 135.2 156 49.4
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.0e-29 134.0 87 66.7
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.9e-28 129.8 86 70.9
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.1e-26 124.0 119 47.9
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-23 113.2 159 42.1
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.9e-23 113.2 159 42.1
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.3e-20 102.1 152 40.8
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.6e-19 100.1 64 78.1
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 1.5e-17 93.6 144 33.3
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 8.4e-16 87.8 97 42.3
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.3e-12 75.5 51 66.7
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.3e-12 75.5 58 55.2
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 6.2e-11 71.6 47 66.0
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 5.8e-09 65.1 47 59.6
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 3.5e-06 55.8 37 62.2


User provided reference genes

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