Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 0.0e+00 1091.6 550 100.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.1e-216 755.4 554 73.5
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.3e-181 638.6 562 62.1
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.9e-179 630.9 552 61.8
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.9e-179 630.9 552 62.1
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 8.3e-177 624.4 552 61.1
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.1e-176 624.0 559 59.7
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.4e-176 623.6 552 60.7
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 3.2e-176 622.5 553 61.3
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 4.1e-176 622.1 552 60.7
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 4.1e-176 622.1 552 60.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 5.4e-176 621.7 552 61.4
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 9.2e-176 620.9 552 61.2
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.6e-175 620.2 552 61.6
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 6.0e-175 618.2 554 60.1
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 6.0e-175 618.2 559 59.2
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.0e-174 615.9 552 60.7
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 5.0e-174 615.1 558 58.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 8.6e-174 614.4 552 60.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.1e-173 614.0 558 58.6
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 4.3e-173 612.1 554 60.3
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 5.6e-173 611.7 558 59.0
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.2e-172 610.5 559 58.7
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.8e-172 609.4 557 58.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.8e-172 609.4 557 58.2
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 6.2e-172 608.2 559 58.9
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.4e-171 607.1 559 59.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.8e-171 606.7 558 60.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 4.0e-171 605.5 552 59.6
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 8.9e-171 604.4 559 58.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 8.9e-171 604.4 558 60.0
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.2e-170 604.0 552 59.2
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.2e-170 604.0 558 57.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.2e-170 604.0 560 59.1
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.5e-170 603.6 558 60.2
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.0e-170 603.2 559 59.0
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.4e-170 602.4 585 56.4
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.4e-170 602.4 559 58.5
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.4e-170 602.4 560 58.8
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.3e-169 600.5 559 58.5
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-169 600.5 560 58.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.7e-169 600.1 572 58.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.2e-169 599.7 559 57.2
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.2e-169 599.7 559 57.8
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.7e-169 599.0 552 59.4
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.4e-168 597.0 559 58.3
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.4e-168 596.3 559 58.0
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.2e-168 595.9 560 57.9
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 4.1e-168 595.5 558 57.9
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 5.4e-168 595.1 556 59.4
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.6e-167 593.6 559 57.6
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.6e-167 593.6 559 58.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.5e-167 592.4 559 57.6
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 3.5e-167 592.4 552 58.7
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 6.0e-167 591.7 559 58.1
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.0e-166 590.9 558 57.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.7e-166 590.1 559 58.5
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.3e-166 589.7 553 57.7
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.0e-166 589.3 563 57.0
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 3.0e-166 589.3 552 58.7
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.9e-166 589.0 562 57.5
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 5.1e-166 588.6 563 57.0
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 5.1e-166 588.6 559 58.3
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 5.1e-166 588.6 559 57.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-165 587.4 560 58.0
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.9e-165 586.6 555 59.3
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.5e-165 586.3 559 57.4
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 5.6e-165 585.1 519 60.7
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 7.3e-165 584.7 575 56.0
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.2e-164 583.9 559 55.6
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.8e-164 582.8 557 56.2
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.1e-163 580.9 553 56.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.8e-163 580.1 552 56.3
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 4.0e-163 578.9 556 56.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 4.0e-163 578.9 553 58.6
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.2e-162 577.4 560 56.6
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 2.9e-161 572.8 500 60.2
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 2.1e-159 566.6 560 55.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.0e-158 564.3 553 55.3
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.3e-158 563.1 596 53.9
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 7.3e-157 558.1 554 54.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 7.3e-157 558.1 498 59.4
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 4.7e-156 555.4 561 54.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 8.1e-156 554.7 557 54.8
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.1e-155 554.3 557 54.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.8e-155 553.5 572 53.0
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.8e-155 553.5 553 54.6
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.6e-154 549.7 554 55.4
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 7.6e-154 548.1 561 54.5
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.2e-153 546.6 554 54.3
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.9e-153 545.4 553 54.8
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 8.4e-153 544.7 553 54.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 8.4e-153 544.7 564 54.8
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.9e-152 543.5 536 56.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.4e-152 543.1 564 55.1
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 5.4e-152 542.0 553 54.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 5.4e-152 542.0 553 54.8
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 1.2e-151 540.8 554 54.2
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.7e-151 539.7 553 54.1
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.7e-150 537.0 481 59.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.9e-150 535.8 558 53.4
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 9.6e-149 531.2 577 52.5
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.8e-148 529.6 646 48.0
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 8.1e-148 528.1 553 52.6
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 6.0e-143 511.9 508 55.7
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 7.9e-143 511.5 487 57.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 8.7e-142 508.1 592 49.7
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.1e-141 507.7 552 52.0
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 1.5e-138 497.3 552 51.4
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.6e-138 496.5 560 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.9e-138 494.6 562 48.9
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.6e-135 487.3 561 51.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.9e-133 480.3 550 49.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 7.4e-133 478.4 555 47.0
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 4.8e-132 475.7 488 53.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.4e-123 446.8 474 54.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.4e-115 420.2 551 45.4
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 3.4e-114 416.4 432 54.4
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 3.9e-102 376.3 359 55.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.6e-79 301.2 629 34.5
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.6e-79 301.2 275 59.3
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 5.4e-75 286.2 310 49.7
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 5.9e-74 282.7 584 35.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.0e-73 279.6 233 67.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.9e-64 251.1 183 63.9
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.2e-62 243.0 303 44.9
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 9.8e-61 238.8 199 68.8
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.9e-59 234.6 435 38.6
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 7.0e-59 232.6 583 31.7
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.2e-58 231.9 309 42.7
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.5e-50 203.8 173 56.6
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.2e-42 178.7 168 55.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.0e-42 176.4 474 31.6
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 6.2e-39 166.4 310 36.1
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.6e-37 161.0 549 28.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 7.1e-35 152.9 447 28.6
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.1e-31 141.4 466 28.5
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 9.9e-29 132.5 443 28.0
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 1.0e-25 122.5 168 41.7
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-16 92.4 200 36.5
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.7e-15 87.4 274 30.7
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.6e-10 72.0 79 53.2
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 3.0e-09 67.8 79 48.1
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-08 65.9 65 55.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 7.4e-08 63.2 60 53.3
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 1.6e-07 62.0 80 45.0
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 2.2e-07 61.6 79 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.2e-07 59.7 207 26.1
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 8.2e-07 59.7 79 41.8


User provided reference genes

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