Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.3e-277 958.4 522 100.0
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 8.0e-145 518.1 538 59.1
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 4.0e-144 515.8 539 55.8
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.5e-140 502.7 545 55.6
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.3e-136 490.0 532 54.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.3e-136 490.0 572 50.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 4.0e-136 489.2 552 52.7
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.2e-135 487.6 560 56.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.0e-135 486.9 544 56.2
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 4.4e-135 485.7 547 56.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 9.8e-135 484.6 599 51.8
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.7e-134 483.8 553 57.1
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.7e-134 482.6 557 52.8
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 3.7e-134 482.6 540 53.9
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 4.8e-134 482.3 540 53.9
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.5e-130 470.7 549 54.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.3e-130 469.5 542 52.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 5.5e-130 468.8 534 54.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 9.5e-130 468.0 544 51.7
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.6e-129 467.2 539 55.3
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.6e-129 467.2 491 56.2
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.6e-129 467.2 558 53.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 8.0e-129 464.9 537 52.5
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.8e-128 463.8 539 51.9
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 3.0e-128 463.0 552 50.9
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.0e-128 462.6 542 52.4
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 5.2e-128 462.2 548 53.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 6.8e-128 461.8 537 54.4
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.6e-127 459.9 541 55.1
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.7e-127 458.8 539 52.5
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.5e-127 458.4 539 52.5
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-125 454.1 540 53.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.8e-125 453.8 546 52.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.4e-125 453.4 539 52.1
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.4e-125 453.4 531 54.2
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.1e-125 453.0 452 58.0
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.2e-124 451.1 560 52.0
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.6e-124 450.7 554 50.7
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 5.9e-124 448.7 551 51.9
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 5.0e-123 445.7 550 52.4
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 6.6e-123 445.3 545 53.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.3e-122 442.6 452 57.7
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 7.3e-122 441.8 552 51.8
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.6e-121 440.7 538 50.6
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 2.8e-121 439.9 528 48.9
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 3.6e-121 439.5 550 52.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 3.6e-121 439.5 537 52.0
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 8.0e-121 438.3 552 52.5
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 4.0e-120 436.0 540 53.3
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 8.9e-120 434.9 544 53.7
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.6e-119 433.3 540 49.8
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 4.4e-119 432.6 532 52.3
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 5.8e-119 432.2 544 52.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.5e-119 431.8 559 52.2
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.7e-118 430.6 536 49.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.2e-118 430.3 538 50.6
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.9e-118 429.9 541 53.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 8.3e-118 428.3 523 52.2
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 8.3e-118 428.3 544 49.8
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.2e-116 424.5 544 53.1
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.5e-116 422.9 538 51.5
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 6.0e-116 422.2 538 51.7
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 6.6e-115 418.7 622 46.9
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 8.6e-115 418.3 501 51.5
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.5e-114 416.8 532 52.8
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.5e-114 416.8 540 50.4
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 9.5e-114 414.8 550 53.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 3.6e-113 412.9 549 49.4
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 4.7e-113 412.5 578 48.4
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.3e-112 410.2 530 50.0
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 5.2e-112 409.1 537 54.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.4e-111 406.4 527 51.4
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.4e-111 406.0 527 51.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.9e-110 403.3 550 51.6
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.1e-109 399.4 530 53.2
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.7e-108 396.7 550 50.9
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 3.5e-108 396.4 463 52.1
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 4.6e-108 396.0 523 46.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.3e-107 394.4 527 51.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 3.0e-107 393.3 560 47.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 5.1e-107 392.5 552 50.2
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 7.3e-106 388.7 522 48.3
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.6e-105 387.5 547 46.8
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 3.6e-105 386.3 547 49.9
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.0e-104 382.9 528 51.3
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 8.9e-104 381.7 526 49.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 3.4e-103 379.8 568 43.3
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 9.9e-103 378.3 549 46.4
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.2e-102 377.1 525 45.9
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 5.4e-101 372.5 545 47.9
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 7.1e-101 372.1 522 47.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 7.1e-101 372.1 547 46.4
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.2e-100 371.3 535 47.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.7e-99 367.5 547 46.1
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 4.3e-98 362.8 523 47.8
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 5.6e-98 362.5 422 53.1
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 4.7e-97 359.4 528 47.3
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.4e-96 357.8 530 46.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.4e-96 357.8 546 45.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.4e-96 357.1 545 44.6
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.2e-95 354.8 531 47.6
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.2e-95 354.8 528 46.2
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 4.4e-95 352.8 541 45.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.8e-94 349.7 535 45.8
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.8e-94 349.7 535 45.8
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-94 349.7 545 45.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 4.9e-94 349.4 533 46.2
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 6.4e-94 349.0 549 45.0
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.1e-93 345.5 545 44.8
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 7.1e-85 318.9 656 37.8
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.5e-82 310.5 346 52.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.1e-81 307.4 582 38.7
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.2e-77 293.1 520 43.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.5e-74 283.9 516 42.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 9.0e-72 275.4 305 54.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 3.8e-70 270.0 521 41.8
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 3.8e-70 270.0 521 41.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.6e-65 254.6 299 50.2
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 8.4e-62 242.3 314 47.1
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.4e-56 224.9 579 34.9
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 9.0e-56 222.2 595 34.6
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.2e-52 211.8 404 39.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 9.7e-50 202.2 522 34.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.0e-47 194.5 402 39.3
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.0e-46 192.2 176 56.8
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.4e-45 188.3 251 53.4
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 7.2e-45 186.0 414 36.5
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.7e-38 164.9 298 39.9
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.2e-38 164.5 159 55.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 2.1e-36 157.9 723 28.6
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-36 157.1 280 38.6
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 8.0e-36 156.0 536 30.8
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.0e-30 136.7 257 40.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.0e-27 129.0 199 42.7
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.5e-26 125.2 464 31.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.0e-23 114.8 107 58.9
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.4e-21 105.9 231 38.5
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.6e-20 105.1 94 55.3
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 7.5e-18 96.3 172 36.0
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.7e-17 95.1 143 46.2
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.8e-17 94.4 135 46.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.7e-14 85.1 126 41.3
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.3e-14 84.7 108 50.9
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.0e-14 83.6 417 27.8
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 2.1e-12 78.2 377 27.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-12 78.2 89 44.9
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 5.2e-11 73.6 81 50.6
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 9.8e-10 69.3 171 35.7
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.3e-09 68.9 216 31.5
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.7e-07 61.2 98 43.9


User provided reference genes

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