Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 4.1e-156 554.7 280 100.0
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 8.1e-136 487.3 272 87.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 8.9e-135 483.8 278 84.2
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 8.9e-135 483.8 275 86.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-133 479.9 271 86.3
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.7e-133 479.6 272 84.9
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 3.8e-133 478.4 271 86.0
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.9e-133 478.0 271 86.0
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.4e-132 476.5 271 85.6
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 2.4e-132 475.7 272 85.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.2e-132 474.9 271 86.0
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 7.1e-132 474.2 271 84.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 7.1e-132 474.2 276 82.2
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.2e-131 473.4 271 85.2
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.1e-131 472.6 271 84.9
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.7e-131 472.2 272 83.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.7e-131 472.2 272 82.7
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 6.0e-131 471.1 272 84.6
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 7.8e-131 470.7 272 83.5
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.0e-130 470.3 272 83.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.3e-130 469.9 271 83.4
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.3e-130 469.9 270 83.7
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.3e-130 469.9 272 83.1
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 1.7e-130 469.5 272 84.2
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 2.3e-130 469.2 272 84.2
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 2.3e-130 469.2 278 80.9
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 3.0e-130 468.8 274 83.6
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 3.0e-130 468.8 274 82.5
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.0e-130 468.8 272 82.4
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.1e-130 468.0 272 84.2
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 5.1e-130 468.0 272 84.2
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 6.6e-130 467.6 272 83.8
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 6.6e-130 467.6 272 83.8
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 8.7e-130 467.2 276 81.9
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.1e-129 466.8 272 83.5
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.5e-129 466.5 274 81.4
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.5e-129 465.7 272 82.0
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 3.3e-129 465.3 272 83.5
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 4.3e-129 464.9 274 81.0
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 5.6e-129 464.5 274 81.0
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.6e-128 463.0 272 82.7
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.1e-128 462.6 278 80.6
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 2.8e-128 462.2 271 81.5
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 3.6e-128 461.8 272 80.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.6e-128 461.8 271 80.8
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 4.8e-128 461.5 272 81.2
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.8e-127 459.5 275 82.5
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.8e-127 459.5 275 82.5
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.4e-127 459.1 271 81.2
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 3.1e-127 458.8 272 81.6
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 3.4e-126 455.3 271 80.4
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 5.8e-126 454.5 271 80.1
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 7.6e-126 454.1 272 81.2
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 7.6e-126 454.1 272 79.4
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 9.9e-126 453.8 271 79.3
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 9.9e-126 453.8 272 78.7
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-125 453.4 272 80.1
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.2e-125 452.6 272 80.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-125 452.6 272 80.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.2e-125 452.6 272 80.1
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 2.2e-125 452.6 262 83.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.9e-125 452.2 272 80.1
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 2.9e-125 452.2 271 79.3
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 3.8e-125 451.8 272 80.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 4.9e-125 451.4 304 74.7
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 4.9e-125 451.4 272 80.5
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 6.4e-125 451.1 272 80.9
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 6.4e-125 451.1 271 79.3
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 8.4e-125 450.7 272 80.9
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 8.4e-125 450.7 272 80.1
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.4e-124 449.9 272 79.8
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 3.2e-124 448.7 272 80.5
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 4.2e-124 448.4 271 79.7
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 7.1e-124 447.6 272 80.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 7.1e-124 447.6 271 79.3
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 9.3e-124 447.2 274 78.5
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 9.3e-124 447.2 271 79.7
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 2.1e-123 446.0 306 74.2
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.1e-123 446.0 271 78.2
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 8.7e-122 440.7 272 75.7
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.1e-121 440.3 257 83.7
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.1e-121 440.3 274 77.4
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 3.3e-121 438.7 271 78.2
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.3e-120 436.8 271 77.5
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-120 435.6 271 77.1
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.8e-120 434.9 270 79.6
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 8.1e-120 434.1 271 77.1
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.5e-118 429.9 272 74.6
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 2.2e-117 426.0 271 76.0
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 4.2e-116 421.8 278 74.8
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.4e-116 421.4 263 74.9
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 1.6e-115 419.9 271 74.5
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.0e-115 417.9 301 69.1
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.8e-114 416.4 272 75.0
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 5.1e-114 414.8 245 80.8
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.7e-114 414.5 283 72.8
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 2.5e-113 412.5 271 70.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 2.1e-112 409.5 383 57.4
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.1e-112 409.5 246 78.5
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 8.1e-112 407.5 271 69.7
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.0e-110 402.9 271 69.0
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.2e-109 399.4 228 86.0
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.8e-109 398.7 271 68.3
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 4.2e-108 395.2 224 85.3
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 7.1e-108 394.4 246 76.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 7.1e-108 394.4 272 72.4
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.5e-102 376.7 271 71.6
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.9e-101 372.5 271 64.2
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 7.1e-100 367.9 251 75.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.8e-98 363.2 221 81.4
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 5.7e-97 358.2 272 63.6
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 3.7e-96 355.5 277 62.1
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.4e-95 353.6 197 86.8
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.0e-89 333.2 271 58.3
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 4.1e-87 325.5 293 54.9
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 5.3e-87 325.1 272 61.0
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.6e-86 322.8 271 61.6
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.0e-85 320.9 271 61.3
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.7e-83 312.8 180 80.6
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.2e-80 303.1 249 64.7
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.8e-79 300.1 273 57.9
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 5.0e-77 292.0 276 51.8
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 3.0e-74 282.7 168 82.7
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 7.4e-73 278.1 272 54.4
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.7e-72 276.9 152 90.1
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 2.6e-70 269.6 156 80.8
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 6.3e-64 248.4 165 75.8
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 7.0e-63 245.0 206 63.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 3.6e-51 206.1 273 46.2
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.4e-50 204.1 154 65.6
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.0e-50 203.0 276 47.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.4e-47 193.4 180 56.7
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 7.0e-47 191.8 272 43.4
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.7e-38 163.3 159 59.7
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.8e-35 153.3 97 75.3
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 2.3e-34 150.2 265 40.8
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 9.8e-33 144.8 269 39.0
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 9.2e-31 138.3 185 46.5
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 1.5e-28 131.0 261 37.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.5e-28 131.0 78 75.6
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.1e-27 127.1 135 51.1
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 1.8e-26 124.0 135 50.4
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.6e-25 118.6 92 64.1
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.4e-18 97.1 73 65.8
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 3.1e-18 96.7 150 42.7
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.5e-12 77.0 45 80.0
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.8e-11 72.8 89 47.2
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 4.0e-10 69.7 49 69.4
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 6.4e-08 62.4 45 73.3
Hund03807 Selenicereus undatus HOM05D005146 ORTHO05D383678 1.6e-06 57.8 59 55.9


User provided reference genes

Program Settings