Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 9.5e-187 656.8 346 100.0
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 3.9e-79 299.3 359 49.9
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 5.0e-79 298.9 360 49.2
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 4.3e-78 295.8 360 48.9
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 9.5e-78 294.7 360 48.3
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.4e-73 280.0 345 47.5
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.6e-72 277.3 334 50.9
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.8e-68 263.8 341 45.2
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 3.4e-67 259.6 378 43.4
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 5.4e-65 252.3 371 42.3
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.5e-64 249.6 351 43.6
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 4.6e-64 249.2 349 46.1
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 6.0e-64 248.8 362 43.4
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.0e-64 248.8 357 41.5
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.0e-63 248.1 368 43.8
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.3e-63 247.7 368 43.5
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 3.0e-63 246.5 371 42.0
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 8.6e-63 245.0 339 44.0
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 8.6e-63 245.0 346 43.6
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.5e-62 244.2 345 43.8
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.9e-62 243.8 355 44.8
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.3e-62 243.0 357 41.2
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 5.6e-62 242.3 352 44.0
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 5.6e-62 242.3 357 41.2
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.6e-62 242.3 342 41.8
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 9.5e-62 241.5 338 45.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 9.5e-62 241.5 361 39.1
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.8e-61 240.0 347 43.8
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.7e-61 239.2 356 41.3
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 8.1e-61 238.4 355 41.4
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 8.1e-61 238.4 352 41.5
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.1e-60 238.0 373 45.0
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.4e-60 237.7 347 42.9
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.8e-60 237.3 357 41.5
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 6.8e-60 235.3 354 42.9
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 7.6e-59 231.9 363 38.6
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 9.9e-59 231.5 306 44.4
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.3e-58 231.1 372 40.6
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 6.4e-58 228.8 348 42.0
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 4.2e-57 226.1 299 46.8
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 5.4e-57 225.7 365 40.3
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 7.1e-57 225.3 366 38.3
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.0e-55 221.5 348 38.8
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.7e-55 220.7 337 40.7
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 3.0e-55 219.9 388 38.4
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.1e-54 218.0 363 38.0
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.1e-54 218.0 348 39.9
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.5e-54 216.9 368 39.4
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 7.3e-54 215.3 367 39.0
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 7.3e-54 215.3 382 39.8
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.2e-53 214.5 345 37.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 2.1e-53 213.8 301 40.2
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.6e-53 213.0 371 38.3
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.2e-53 212.2 320 39.4
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.4e-52 211.1 351 39.9
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.8e-52 210.7 377 40.8
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.4e-52 210.3 368 37.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 3.1e-52 209.9 345 38.3
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.3e-52 209.1 368 38.6
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 9.0e-52 208.4 311 44.7
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.8e-51 205.7 368 38.3
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 5.8e-51 205.7 371 38.8
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 5.8e-51 205.7 354 37.9
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 7.6e-51 205.3 351 39.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 8.4e-50 201.8 382 39.3
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 8.4e-50 201.8 410 35.4
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 8.4e-50 201.8 320 38.8
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 8.4e-50 201.8 313 43.8
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 2.4e-49 200.3 337 38.6
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 2.7e-48 196.8 337 36.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 4.6e-48 196.1 377 40.1
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 7.8e-48 195.3 309 37.5
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.3e-47 194.5 335 38.8
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 3.9e-47 193.0 342 38.3
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.9e-46 190.7 371 36.7
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.3e-46 189.9 335 37.3
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 4.3e-46 189.5 375 37.6
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 7.3e-46 188.7 359 36.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.3e-45 188.0 342 38.0
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.1e-45 187.2 358 37.4
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.8e-45 186.8 344 37.8
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.8e-45 186.8 339 36.6
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.8e-45 186.8 338 36.7
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.8e-45 186.8 253 43.5
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.2e-45 185.7 345 37.1
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 8.1e-45 185.3 354 36.4
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.1e-44 184.9 335 36.1
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.1e-44 184.9 371 35.8
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 2.4e-44 183.7 338 35.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.0e-44 183.0 317 37.5
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 6.9e-44 182.2 307 38.8
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.5e-43 181.0 340 35.6
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.5e-43 181.0 357 35.9
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 5.8e-43 179.1 344 35.8
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.7e-42 177.6 359 35.9
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 2.9e-42 176.8 345 35.9
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.6e-40 169.5 345 34.8
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 1.0e-39 168.3 342 33.3
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.3e-39 167.9 267 41.6
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.3e-39 167.9 369 35.8
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.3e-39 167.2 215 45.6
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 2.3e-39 167.2 349 34.4
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 3.0e-39 166.8 344 35.8
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 3.9e-39 166.4 344 36.0
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 5.1e-39 166.0 311 35.4
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.1e-38 164.9 345 35.7
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.5e-38 163.7 272 37.9
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.5e-38 163.7 373 35.1
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.3e-37 161.4 312 35.3
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.8e-37 160.2 345 33.3
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.0e-36 156.4 351 32.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 5.3e-36 156.0 344 33.4
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.2e-35 154.8 314 33.8
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 2.0e-35 154.1 304 34.9
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 8.4e-34 148.7 360 31.4
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.4e-33 147.9 343 32.9
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.2e-32 144.8 407 29.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 7.9e-32 142.1 331 31.1
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.3e-31 141.4 366 32.5
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 4.0e-28 129.8 348 29.6
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 6.9e-28 129.0 233 39.5
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 3.4e-27 126.7 167 45.5
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 4.5e-27 126.3 374 28.9
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 3.2e-25 120.2 216 35.2
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 7.1e-25 119.0 335 29.0
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 1.8e-23 114.4 168 45.8
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 8.7e-23 112.1 183 39.9
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 9.7e-22 108.6 180 40.6
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 1.1e-20 105.1 255 31.4
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 5.3e-20 102.8 302 28.1
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.4e-17 94.7 164 36.0
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.4e-17 94.7 360 28.9
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.7e-16 90.5 186 32.3
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 3.0e-15 87.0 345 25.2
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.5e-11 74.7 308 22.7
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 4.2e-09 66.6 92 37.0
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.6e-08 64.7 278 23.7
Dinv39518 Davidia involucrata HOM05D005472 ORTHO05D005897 2.1e-08 64.3 112 39.3
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 4.7e-08 63.2 215 27.0
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.9e-07 60.1 138 35.5
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 8.8e-07 58.9 233 24.0


User provided reference genes

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