Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.0e-71 272.3 135 100.0
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.9e-58 229.2 135 83.0
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.9e-58 229.2 135 83.0
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.5e-58 228.8 135 84.4
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.5e-58 228.8 135 83.0
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 3.3e-58 228.4 135 83.0
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 9.5e-58 226.9 135 84.4
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.6e-57 226.1 135 83.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 3.6e-57 224.9 135 81.5
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 3.6e-57 224.9 125 86.4
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.6e-57 224.9 125 86.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 4.7e-57 224.6 131 81.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 6.2e-57 224.2 130 83.1
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.2e-57 224.2 125 86.4
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 6.2e-57 224.2 125 86.4
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 6.2e-57 224.2 125 86.4
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 8.0e-57 223.8 130 82.3
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 8.0e-57 223.8 125 87.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.0e-56 223.4 125 87.2
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 1.8e-56 222.6 132 81.1
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 4.0e-56 221.5 135 80.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 6.8e-56 220.7 130 80.0
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 8.9e-56 220.3 125 84.8
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.2e-55 219.9 125 84.8
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.0e-55 219.2 125 84.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 2.0e-55 219.2 125 84.0
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.6e-55 218.8 125 84.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 4.4e-55 218.0 130 79.2
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 7.5e-55 217.2 128 82.8
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 9.8e-55 216.9 125 84.8
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.8e-55 216.9 127 82.7
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 2.9e-54 215.3 129 79.8
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 2.9e-54 215.3 125 84.0
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.7e-54 214.9 128 82.0
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.7e-54 214.9 132 78.8
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.7e-54 214.9 127 81.9
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 3.7e-54 214.9 127 81.9
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.9e-54 214.5 129 79.1
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 4.9e-54 214.5 125 83.2
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 4.9e-54 214.5 135 77.0
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 6.4e-54 214.2 128 80.5
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 8.3e-54 213.8 133 75.9
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.1e-53 213.4 125 80.0
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.4e-53 213.0 129 79.1
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.4e-53 213.0 125 80.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.9e-53 212.6 130 79.2
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.9e-53 212.6 131 77.9
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.9e-53 212.6 125 80.0
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.2e-53 211.8 135 76.3
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 4.1e-53 211.5 125 81.6
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.1e-53 211.5 125 81.6
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 5.4e-53 211.1 128 80.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 7.0e-53 210.7 125 78.4
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 7.0e-53 210.7 127 78.7
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 9.2e-53 210.3 125 80.8
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.6e-52 209.5 125 81.6
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-52 209.5 125 81.6
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-52 209.5 125 81.6
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.6e-52 209.5 125 81.6
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.6e-52 209.5 125 79.2
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 2.0e-52 209.1 125 81.6
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 2.7e-52 208.8 125 78.4
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 3.5e-52 208.4 125 80.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 3.5e-52 208.4 125 80.0
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 4.6e-52 208.0 119 80.7
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 6.0e-52 207.6 125 80.8
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 7.8e-52 207.2 129 78.3
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-51 206.8 125 80.8
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.0e-51 206.8 125 77.6
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.3e-51 206.5 125 79.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 76.4
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.3e-51 205.7 125 77.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.0e-51 205.3 130 76.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 3.9e-51 204.9 125 79.2
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 3.9e-51 204.9 130 76.2
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.9e-51 204.9 125 80.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 8.6e-51 203.8 125 78.4
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 8.6e-51 203.8 119 81.5
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 8.6e-51 203.8 127 77.2
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 8.6e-51 203.8 125 77.6
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.1e-50 203.4 119 81.5
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 125 77.6
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 125 77.6
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.5e-50 203.0 127 77.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.5e-50 202.2 127 75.6
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 4.3e-50 201.4 178 61.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.3e-50 201.4 125 79.2
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 7.3e-50 200.7 128 75.8
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 9.5e-50 200.3 127 76.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 9.5e-50 200.3 129 75.2
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 76.4
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 76.4
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 76.4
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 2.1e-49 199.1 127 76.4
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 3.6e-49 198.4 127 76.4
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 3.6e-49 198.4 127 76.4
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 3.6e-49 198.4 127 76.4
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.6e-49 198.4 125 76.0
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 3.6e-49 198.4 125 76.0
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 6.2e-49 197.6 125 76.0
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 8.1e-49 197.2 127 75.6
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 8.1e-49 197.2 127 75.6
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 8.1e-49 197.2 127 75.6
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 2.3e-48 195.7 125 74.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 5.2e-48 194.5 125 72.8
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 8.9e-48 193.7 127 74.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.2e-47 193.4 120 75.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 2.0e-47 192.6 128 75.0
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 5.8e-47 191.0 129 76.0
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.3e-46 189.9 125 73.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.6e-44 183.0 109 74.3
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.9e-43 178.3 129 69.8
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.1e-42 176.8 103 80.6
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.3e-38 163.3 96 78.1
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 4.6e-36 154.8 112 67.9
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 5.6e-34 147.9 84 84.5
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.6e-33 145.2 82 85.4
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 4.0e-32 141.7 83 79.5
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 6.4e-30 134.4 86 76.7
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 1.4e-29 133.3 79 83.5
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 4.3e-26 121.7 88 64.8
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 2.8e-25 119.0 102 56.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.5e-23 113.2 127 53.5
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 3.8e-22 108.6 89 60.7
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.4e-21 105.9 66 74.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.2e-20 103.6 59 86.4
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.7e-20 102.4 66 74.2
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.1e-18 97.1 77 68.8
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 2.1e-17 92.8 83 54.2
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 2.2e-14 82.8 48 81.2
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 5.5e-13 78.2 81 48.1
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.6e-12 76.6 117 45.3
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.8e-11 73.2 60 71.7
Nitab4.5_0005166g0030 Nicotiana tabacum HOM05D001081 ORTHO05D025899 4.3e-10 68.6 60 68.3
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 7.4e-10 67.8 60 70.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 9.6e-10 67.4 60 68.3
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.1e-08 62.4 37 81.1
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 3.1e-08 62.4 54 46.3
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.6e-07 57.8 40 62.5


User provided reference genes

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