Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.5e-152 542.7 258 100.0
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.7e-79 300.1 220 61.4
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.9e-79 298.5 220 62.3
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 1.9e-75 286.6 199 65.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.9e-75 286.6 221 59.3
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.3e-74 283.9 207 63.8
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 3.1e-73 279.3 212 64.6
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.5e-72 276.9 196 63.8
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 1.3e-71 273.9 213 58.7
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 6.4e-71 271.6 195 63.6
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.1e-70 270.8 224 55.8
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.2e-69 267.3 219 55.7
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 6.0e-69 265.0 222 55.9
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.9e-69 264.6 214 58.4
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 7.9e-69 264.6 196 62.2
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.9e-68 262.3 219 53.4
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 7.3e-67 258.1 212 56.6
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.2e-66 255.0 211 56.4
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 2.4e-65 253.1 210 56.2
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 5.3e-65 251.9 207 58.9
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.9e-65 251.5 214 55.1
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.9e-65 251.5 214 55.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 6.9e-65 251.5 195 59.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 9.0e-65 251.1 193 59.6
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-64 250.8 192 61.5
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.5e-64 250.4 212 55.2
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 2.6e-64 249.6 215 58.6
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.6e-64 249.6 206 57.3
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.4e-64 249.2 217 53.5
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.8e-64 248.4 207 58.5
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.6e-64 248.1 192 59.9
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 7.6e-64 248.1 192 59.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 9.9e-64 247.7 192 59.9
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.7e-63 246.9 207 57.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.2e-63 246.5 193 59.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.2e-63 246.5 227 52.9
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.8e-63 245.7 216 55.6
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 3.8e-63 245.7 212 56.1
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.9e-63 245.4 188 61.2
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 6.4e-63 245.0 198 56.1
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.9e-62 243.4 209 55.5
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.9e-62 243.4 212 55.7
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.4e-62 243.0 213 54.5
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 5.5e-62 241.9 218 52.3
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 7.1e-62 241.5 195 55.9
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.1e-62 241.5 220 54.1
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 9.3e-62 241.1 219 51.6
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 9.3e-62 241.1 207 57.5
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.2e-61 240.7 205 55.1
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-61 240.7 191 57.6
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.6e-61 240.4 226 51.8
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.6e-61 240.4 193 58.5
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 3.5e-61 239.2 233 49.8
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 6.0e-61 238.4 213 51.6
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 6.0e-61 238.4 229 50.2
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.0e-60 237.7 209 54.5
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.8e-60 236.9 207 55.1
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.8e-60 236.9 237 50.2
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.3e-60 236.5 193 58.0
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.3e-60 236.5 205 54.1
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 3.0e-60 236.1 206 53.4
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.0e-60 236.1 213 54.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 5.1e-60 235.3 206 54.9
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.1e-60 235.3 211 52.6
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 5.1e-60 235.3 211 52.1
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 6.7e-60 235.0 206 54.9
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 6.7e-60 235.0 215 56.3
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.7e-60 235.0 193 55.4
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.7e-60 235.0 193 55.4
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 8.7e-60 234.6 204 55.9
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 8.7e-60 234.6 210 53.3
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 8.7e-60 234.6 213 52.1
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-59 234.2 207 55.6
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-59 233.8 206 54.4
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.5e-59 233.8 198 55.6
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.9e-59 233.4 205 53.7
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.9e-59 233.4 197 56.9
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.9e-59 233.4 207 53.1
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.9e-59 233.4 190 59.5
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 2.5e-59 233.0 204 55.9
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 3.3e-59 232.6 220 51.8
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 4.3e-59 232.3 218 53.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 4.3e-59 232.3 191 58.6
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 5.6e-59 231.9 219 52.1
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 5.6e-59 231.9 222 51.4
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.4e-59 231.5 210 52.9
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 7.4e-59 231.5 195 54.9
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.6e-58 230.3 207 54.1
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.6e-58 230.3 246 49.6
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.1e-58 229.9 192 54.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 2.8e-58 229.6 204 52.9
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.8e-58 229.6 215 52.1
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 6.2e-58 228.4 209 50.7
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 6.2e-58 228.4 220 51.4
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 6.2e-58 228.4 215 51.2
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.4e-57 227.3 207 53.1
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-57 226.5 208 53.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.2e-56 224.2 222 48.6
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-56 224.2 212 50.9
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.0e-56 223.4 196 54.1
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.4e-56 222.6 212 50.9
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.4e-56 222.6 212 50.9
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 5.8e-56 221.9 211 50.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.0e-55 221.1 213 51.6
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.3e-55 220.7 212 50.9
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-55 220.7 208 51.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.3e-55 220.7 188 53.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.2e-55 219.9 213 52.1
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.2e-55 219.9 210 53.3
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 6.5e-55 218.4 217 48.4
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.5e-55 218.4 217 52.1
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 8.4e-55 218.0 211 50.2
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.1e-54 217.6 205 51.2
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.9e-54 216.9 215 48.4
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 3.2e-54 216.1 205 49.8
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-54 215.7 227 47.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 4.2e-54 215.7 208 50.5
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.2e-54 215.7 203 49.8
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.5e-54 215.3 210 50.0
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.3e-54 214.5 225 48.0
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.3e-54 214.5 211 50.2
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 9.3e-54 214.5 226 46.9
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.2e-53 214.2 203 51.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.6e-53 213.8 226 46.9
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.6e-53 213.8 172 57.0
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 2.1e-53 213.4 230 47.0
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.1e-53 213.4 230 47.0
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.7e-53 213.0 207 50.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 4.6e-53 212.2 196 52.0
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 6.0e-53 211.8 226 46.5
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 6.0e-53 211.8 195 53.3
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.0e-52 211.1 211 48.3
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-52 210.3 208 48.6
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.3e-52 209.9 203 49.8
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.3e-51 206.1 213 48.4
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.3e-50 204.1 187 52.9
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.4e-49 199.9 213 46.9
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 4.5e-48 195.7 219 45.7
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.1e-45 186.8 182 51.6
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 5.7e-43 178.7 179 46.9
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.3e-42 177.6 197 44.7
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 8.5e-39 164.9 223 43.0
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 7.2e-38 161.8 109 68.8
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.2e-37 161.0 131 57.3
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.7e-37 159.8 127 59.8
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 3.6e-37 159.5 165 47.3
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.6e-37 159.1 215 38.6
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 2.0e-35 153.7 214 41.6
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.4e-35 151.8 112 62.5
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.2e-34 150.2 130 54.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 3.7e-34 149.4 115 62.6
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 8.2e-34 148.3 216 39.8
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 2.9e-31 139.8 126 50.8
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.6e-29 134.0 147 47.6
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 7.9e-29 131.7 109 56.0
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.0e-27 127.1 150 46.0
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 5.7e-27 125.6 179 35.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 2.0e-24 117.1 103 55.3
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 3.5e-24 116.3 96 53.1
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.7e-23 114.0 90 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 1.5e-22 110.9 150 40.7
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.5e-22 110.9 103 49.5
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.8e-20 104.0 109 48.6
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 2.3e-20 103.6 221 33.0
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 5.2e-20 102.4 131 41.2
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 8.8e-20 101.7 85 52.9
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 8.8e-20 101.7 109 46.8
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 7.5e-19 98.6 77 53.2
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 1.7e-18 97.4 126 43.7
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 1.1e-17 94.7 85 51.8
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-16 90.1 100 46.0
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 3.5e-16 89.7 88 47.7
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.9e-16 89.0 84 54.8
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-13 81.3 84 48.8
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 6.1e-13 79.0 59 61.0
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-12 76.3 76 50.0
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.0e-11 73.9 65 49.2
CDE02G3279 Ceratophyllum demersum HOM05D000901 ORTHO05D128872 1.1e-06 58.2 38 68.4


User provided reference genes

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