Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 3.7e-39 164.5 86 100.0
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 3.2e-27 124.8 78 80.8
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 2.3e-25 118.6 79 75.9
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 4.0e-25 117.9 80 73.8
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 6.7e-25 117.1 80 71.2
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 8.8e-25 116.7 80 72.5
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 8.8e-25 116.7 78 76.9
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 2.0e-24 115.5 76 76.3
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 2.6e-24 115.2 78 73.1
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 3.3e-24 114.8 78 71.8
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 3.3e-24 114.8 78 74.4
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 5.7e-24 114.0 76 75.0
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 5.7e-24 114.0 78 73.1
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 5.7e-24 114.0 78 74.4
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 7.5e-24 113.6 78 73.1
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 7.5e-24 113.6 78 74.4
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 7.5e-24 113.6 80 70.0
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 7.5e-24 113.6 78 73.1
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 7.5e-24 113.6 78 73.1
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 9.7e-24 113.2 80 72.5
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 9.7e-24 113.2 76 73.7
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 9.7e-24 113.2 77 75.3
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 1.3e-23 112.8 78 71.8
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 1.7e-23 112.5 80 70.0
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 1.7e-23 112.5 78 73.1
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 1.7e-23 112.5 78 73.1
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 1.7e-23 112.5 78 74.4
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 2.2e-23 112.1 80 68.8
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 2.8e-23 111.7 79 73.4
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 2.8e-23 111.7 76 72.4
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 2.8e-23 111.7 78 70.5
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 3.7e-23 111.3 79 70.9
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 4.8e-23 110.9 75 70.7
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 4.8e-23 110.9 77 72.7
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 6.3e-23 110.5 78 71.8
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 8.3e-23 110.2 76 72.4
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 1.1e-22 109.8 75 76.0
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.4e-22 109.4 80 67.5
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 1.4e-22 109.4 78 71.8
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 1.4e-22 109.4 78 69.2
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 1.8e-22 109.0 76 69.7
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 1.8e-22 109.0 76 69.7
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 2.4e-22 108.6 75 69.3
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 2.4e-22 108.6 76 71.1
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 2.4e-22 108.6 76 69.7
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 2.4e-22 108.6 76 72.4
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 2.4e-22 108.6 76 69.7
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 2.4e-22 108.6 78 67.9
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 3.1e-22 108.2 76 71.1
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.1e-22 108.2 80 65.0
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 4.1e-22 107.8 76 68.4
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 4.1e-22 107.8 76 71.1
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 5.3e-22 107.5 82 65.9
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 5.3e-22 107.5 80 66.2
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 5.3e-22 107.5 76 69.7
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 5.3e-22 107.5 81 64.2
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 7.0e-22 107.1 75 68.0
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 9.1e-22 106.7 80 65.0
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 1.2e-21 106.3 76 72.4
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 1.6e-21 105.9 76 67.1
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 1.6e-21 105.9 76 69.7
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 1.6e-21 105.9 78 65.4
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 2.0e-21 105.5 76 67.1
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 2.7e-21 105.1 75 66.7
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 2.7e-21 105.1 76 71.1
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 3.5e-21 104.8 78 66.7
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 3.5e-21 104.8 76 67.1
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 4.5e-21 104.4 76 68.4
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 4.5e-21 104.4 73 69.9
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 1.7e-20 102.4 76 67.1
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 1.7e-20 102.4 76 68.4
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 5.0e-20 100.9 76 68.4
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 8.5e-20 100.1 76 65.8
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 8.5e-20 100.1 76 65.8
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 8.5e-20 100.1 76 65.8
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 2.5e-19 98.6 76 65.8
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 2.5e-19 98.6 77 67.5
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.2e-19 97.1 71 66.2
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 1.6e-18 95.9 67 71.6
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 1.6e-18 95.9 76 64.5
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 4.7e-18 94.4 73 63.0
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 6.1e-18 94.0 76 64.5
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 2.3e-17 92.0 73 63.0
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 3.0e-17 91.7 66 69.7
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 3.4e-16 88.2 77 57.1
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 1.3e-15 86.3 76 60.5
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 1.7e-15 85.9 61 70.5
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 8.3e-15 83.6 79 59.5
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.4e-14 82.0 136 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 9.1e-14 80.1 77 57.1
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 2.7e-13 78.6 66 59.1
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 1.1e-11 73.2 58 62.1
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 1.5e-11 72.8 52 69.2
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 1.5e-11 72.8 52 69.2
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 2.8e-10 68.6 44 72.7
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 4.7e-10 67.8 44 65.9
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 4.0e-09 64.7 44 68.2
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 5.2e-09 64.3 39 74.4
MCO07G444 Micromonas commoda HOM05D007648 ORTHO05D009613 5.4e-06 54.3 70 44.3


User provided reference genes

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