Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 2.8e-185 651.7 321 100.0
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.9e-136 489.6 317 74.8
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 5.4e-136 488.0 315 75.9
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.3e-134 482.6 315 73.3
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.8e-132 474.9 316 71.8
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 8.1e-132 474.2 317 72.6
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 3.1e-131 472.2 317 71.9
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 9.0e-131 470.7 317 71.6
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.0e-130 469.5 315 73.0
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.0e-130 469.5 319 71.5
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 4.5e-130 468.4 317 73.2
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.7e-129 466.5 316 71.2
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.4e-128 463.4 305 72.8
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 5.4e-128 461.5 346 66.2
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-127 460.3 316 70.6
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 1.8e-126 456.4 341 66.0
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.8e-126 456.4 313 71.6
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 5.1e-126 454.9 316 69.9
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 8.7e-126 454.1 315 68.6
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 8.7e-126 454.1 313 71.2
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 2.5e-125 452.6 316 68.7
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 9.6e-125 450.7 315 72.1
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.6e-124 449.9 315 67.9
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.6e-122 442.6 316 68.7
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 7.6e-122 441.0 315 68.3
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 9.9e-122 440.7 313 68.7
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.7e-121 439.9 313 68.4
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 2.2e-121 439.5 312 67.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.8e-121 438.7 324 68.2
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.8e-121 438.7 317 67.2
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 8.4e-121 437.6 316 67.1
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 8.4e-121 437.6 316 66.1
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 2.5e-120 436.0 310 69.0
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 2.5e-120 436.0 315 66.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 3.2e-120 435.6 316 67.1
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.2e-120 435.6 311 68.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 3.2e-120 435.6 315 67.0
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 5.5e-120 434.9 314 65.3
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 7.1e-120 434.5 312 67.3
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.2e-119 433.7 314 65.9
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.7e-119 432.6 320 66.2
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 3.5e-119 432.2 316 68.0
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 3.5e-119 432.2 315 67.0
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.0e-118 430.6 312 67.3
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.3e-118 430.3 315 66.7
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 3.0e-118 429.1 314 66.2
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 3.0e-118 429.1 316 64.9
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 3.9e-118 428.7 315 66.3
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 3.9e-118 428.7 321 64.8
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 3.9e-118 428.7 316 67.1
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 5.1e-118 428.3 315 66.0
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 5.1e-118 428.3 313 67.4
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 8.7e-118 427.6 315 66.0
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 2.5e-117 426.0 315 66.3
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.6e-117 424.9 315 65.7
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 7.4e-117 424.5 325 62.8
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.3e-116 423.7 315 65.1
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.6e-116 423.3 288 71.9
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 2.1e-116 422.9 311 64.6
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 2.1e-116 422.9 309 65.7
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 3.7e-116 422.2 315 64.4
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.1e-115 420.6 316 64.2
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.1e-115 420.6 309 65.0
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.4e-115 420.2 316 63.6
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 2.4e-115 419.5 309 65.7
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 1.3e-113 413.7 316 63.3
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.7e-113 413.3 310 66.8
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 8.4e-113 411.0 341 58.7
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 3.2e-112 409.1 316 62.3
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 4.2e-112 408.7 352 59.4
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 9.3e-112 407.5 318 62.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.2e-111 407.1 309 61.8
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.6e-111 406.8 316 62.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 2.7e-111 406.0 316 61.7
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 2.7e-111 406.0 317 62.5
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 4.6e-111 405.2 368 56.5
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.8e-110 403.3 316 61.4
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.1e-109 400.6 316 61.4
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 1.1e-109 400.6 286 66.8
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.3e-108 397.1 316 61.4
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.8e-108 395.2 292 68.5
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 1.1e-107 394.0 312 61.9
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.1e-107 394.0 323 60.7
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 5.3e-107 391.7 316 60.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.2e-106 390.6 290 67.2
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.4e-106 389.0 320 61.2
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.4e-104 383.6 316 59.5
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 2.7e-103 379.4 316 58.2
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 2.5e-101 372.9 356 53.7
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 8.2e-100 367.9 363 52.3
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.8e-99 366.7 289 64.7
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.2e-98 364.0 289 64.7
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.2e-96 355.9 317 58.4
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 2.6e-93 346.3 313 56.5
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 9.7e-93 344.4 326 54.6
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 5.9e-90 335.1 309 55.0
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.7e-89 333.6 309 55.0
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.7e-87 325.5 315 55.6
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 7.4e-85 318.2 306 52.6
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 2.2e-84 316.6 289 57.1
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 8.2e-84 314.7 308 52.6
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.1e-83 312.8 305 53.8
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.0e-81 307.8 228 64.0
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 1.1e-80 304.3 228 64.0
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 1.2e-79 300.8 228 63.2
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 4.7e-79 298.9 290 52.8
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 3.7e-76 289.3 203 68.0
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 4.1e-75 285.8 199 67.3
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.6e-74 283.9 308 45.8
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.1e-67 261.2 197 65.5
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 4.5e-66 255.8 206 63.6
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 1.1e-64 251.1 231 56.3
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 5.5e-64 248.8 172 68.6
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 4.7e-63 245.7 202 56.9
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.7e-60 237.3 231 53.2
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.3e-54 216.9 165 66.1
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 9.8e-53 211.5 398 34.7
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 1.7e-52 210.7 315 40.6
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 2.2e-52 210.3 208 52.9
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 6.0e-50 202.2 155 60.0
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.1e-43 181.4 137 62.8
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.0e-41 173.3 131 66.4
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.0e-41 173.3 113 72.6
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 4.1e-35 152.9 298 34.2
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 6.0e-34 149.1 310 32.9
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 1.2e-29 134.8 114 55.3
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 8.4e-28 128.6 83 73.5
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 8.4e-28 128.6 284 31.3
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.1e-24 118.2 153 43.1
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 7.8e-18 95.5 81 60.5
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.2e-12 77.4 79 51.9
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 6.4e-12 75.9 166 34.9
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 8.4e-12 75.5 53 67.9
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 9.3e-11 72.0 76 43.4
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 3.9e-09 66.6 64 54.7
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.9e-08 64.3 78 44.9


User provided reference genes

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