Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 1.6e-40 168.7 72 100.0
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.5e-33 145.6 70 84.3
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.6e-32 142.1 72 80.6
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 2.1e-32 141.7 67 83.6
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 2.8e-32 141.4 68 86.8
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 4.8e-32 140.6 70 81.4
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 4.8e-32 140.6 67 86.6
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 6.2e-32 140.2 70 81.4
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.1e-31 139.4 68 80.9
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 1.1e-31 139.4 70 80.0
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.4e-31 139.0 66 84.8
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.4e-31 139.0 67 83.6
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.8e-31 138.7 66 86.4
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 1.8e-31 138.7 73 79.5
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 1.8e-31 138.7 70 80.0
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.8e-31 138.7 70 80.0
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 1.8e-31 138.7 66 86.4
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.8e-31 138.7 70 80.0
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 3.1e-31 137.9 73 78.1
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.1e-31 137.9 70 80.0
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.3e-31 137.1 70 80.0
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.3e-31 137.1 70 80.0
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 6.9e-31 136.7 72 80.6
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 6.9e-31 136.7 70 78.6
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 6.9e-31 136.7 71 83.1
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 9.0e-31 136.3 69 78.3
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 1.2e-30 136.0 70 80.0
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.5e-30 135.6 70 78.6
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.0e-30 135.2 70 78.6
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 2.6e-30 134.8 67 82.1
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 2.6e-30 134.8 65 83.1
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 3.4e-30 134.4 67 79.1
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 3.4e-30 134.4 67 79.1
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 3.4e-30 134.4 67 79.1
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 3.4e-30 134.4 67 79.1
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 3.4e-30 134.4 65 87.7
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 7.6e-30 133.3 64 82.8
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 1.0e-29 132.9 69 76.8
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.0e-29 132.9 66 78.8
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.0e-29 132.9 66 78.8
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 1.3e-29 132.5 69 76.8
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 1.3e-29 132.5 69 76.8
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 1.3e-29 132.5 69 76.8
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 1.3e-29 132.5 64 82.8
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 2.2e-29 131.7 63 82.5
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 2.9e-29 131.3 65 81.5
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.9e-29 131.3 71 74.6
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.9e-29 131.3 67 82.1
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 3.8e-29 131.0 61 85.2
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 3.8e-29 131.0 67 82.1
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 4.9e-29 130.6 62 82.3
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 4.9e-29 130.6 61 83.6
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 8.4e-29 129.8 66 77.3
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 8.4e-29 129.8 62 82.3
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 1.1e-28 129.4 70 75.7
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 1.4e-28 129.0 65 83.1
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 1.4e-28 129.0 64 78.1
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.4e-28 129.0 64 79.7
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.9e-28 128.6 72 77.8
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.9e-28 128.6 64 81.2
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.9e-28 128.6 67 76.1
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 1.9e-28 128.6 66 77.3
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.2e-28 127.9 70 72.9
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 3.2e-28 127.9 61 82.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 5.5e-28 127.1 67 77.6
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 5.5e-28 127.1 61 80.3
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 9.3e-28 126.3 69 73.9
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 1.6e-27 125.6 72 77.8
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 6.0e-27 123.6 58 86.2
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 7.9e-27 123.2 69 69.6
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.8e-26 122.1 66 72.7
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 2.3e-26 121.7 63 76.2
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 2.3e-26 121.7 67 76.1
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.3e-26 121.7 69 72.5
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 2.3e-26 121.7 63 76.2
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 6.7e-26 120.2 69 71.0
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 6.7e-26 120.2 69 71.0
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 6.7e-26 120.2 69 71.0
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 6.7e-26 120.2 69 71.0
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 6.7e-26 120.2 69 71.0
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 2.5e-25 118.2 63 73.0
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 3.3e-25 117.9 66 71.2
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 4.3e-25 117.5 69 69.6
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 9.6e-25 116.3 64 71.9
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 9.6e-25 116.3 64 71.9
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 1.3e-24 115.9 63 73.0
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 3.7e-24 114.4 64 70.3
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 3.7e-24 114.4 64 70.3
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 3.7e-24 114.4 64 70.3
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 3.7e-24 114.4 75 73.3
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 1.8e-23 112.1 57 75.4
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 5.3e-23 110.5 71 67.6
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 6.9e-23 110.2 53 75.5
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 4.5e-22 107.5 64 67.2
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 4.5e-22 107.5 64 67.2
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 7.6e-22 106.7 50 84.0
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 1.0e-21 106.3 60 70.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.1e-20 102.8 50 82.0
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 1.9e-20 102.1 49 81.6
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 2.5e-20 101.7 52 75.0
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 3.2e-20 101.3 49 81.6
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 5.5e-20 100.5 49 81.6
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 7.1e-20 100.1 69 60.9
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 9.3e-20 99.8 61 68.9
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.2e-19 99.4 48 79.2
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 3.9e-18 94.4 61 60.7
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 3.9e-18 94.4 52 80.8
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 5.1e-18 94.0 49 79.6
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 6.7e-18 93.6 49 77.6
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 1.1e-17 92.8 61 57.4
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 2.4e-15 85.1 52 69.2
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 1.5e-14 82.4 45 71.1
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 2.2e-13 78.6 51 68.6
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.5e-12 75.1 35 82.9
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 2.7e-11 71.6 53 62.3
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 3.6e-11 71.2 36 75.0
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 6.1e-11 70.5 35 85.7
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 6.1e-11 70.5 40 75.0
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 7.9e-11 70.1 36 80.6
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.0e-10 69.7 35 82.9
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.0e-10 69.7 35 82.9
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.4e-10 69.3 33 75.8
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 2.3e-10 68.6 36 72.2
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 5.1e-10 67.4 49 57.1
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 2.0e-09 65.5 32 78.1
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 1.7e-08 62.4 37 67.6
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 3.7e-08 61.2 32 71.9


User provided reference genes

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