Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 1.2e-115 419.9 219 100.0
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.0e-53 214.2 218 58.7
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 4.3e-52 208.8 222 60.8
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 5.7e-52 208.4 220 61.4
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.4e-50 203.8 221 58.8
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 5.3e-50 201.8 219 58.9
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 3.4e-49 199.1 217 57.6
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.3e-48 197.2 224 59.4
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 5.0e-48 195.3 218 56.9
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.1e-47 194.1 216 60.6
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.1e-47 194.1 216 56.0
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.9e-47 193.4 219 60.7
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 3.2e-47 192.6 222 58.1
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 7.2e-47 191.4 218 55.0
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 2.1e-46 189.9 222 57.7
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.6e-46 189.1 216 59.3
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 3.6e-46 189.1 216 55.1
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 4.6e-46 188.7 218 55.5
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 4.6e-46 188.7 223 56.5
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 1.0e-45 187.6 219 56.6
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.4e-45 187.2 224 55.4
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 1.4e-45 187.2 218 57.8
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 2.3e-45 186.4 221 55.2
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 3.9e-45 185.7 215 58.6
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 3.9e-45 185.7 218 56.9
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 8.8e-45 184.5 224 52.7
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 1.1e-44 184.1 220 53.2
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 1.1e-44 184.1 216 54.6
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 2.0e-44 183.3 222 55.9
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.6e-44 183.0 224 52.7
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 2.6e-44 183.0 224 52.7
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 2.6e-44 183.0 219 54.3
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 3.3e-44 182.6 220 56.4
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 4.4e-44 182.2 218 54.6
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 9.7e-44 181.0 219 56.6
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 1.3e-43 180.6 223 56.1
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.3e-43 180.6 219 54.3
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 3.7e-43 179.1 218 55.0
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 8.2e-43 177.9 227 53.7
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 1.4e-42 177.2 220 55.0
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.4e-42 177.2 200 57.0
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 1.8e-42 176.8 218 56.4
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.4e-42 176.4 192 57.8
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 2.4e-42 176.4 218 54.6
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 1.2e-41 174.1 221 55.2
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.0e-40 171.0 215 54.9
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 2.2e-40 169.9 221 52.0
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 2.9e-40 169.5 217 51.2
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 2.9e-40 169.5 222 53.6
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 5.0e-40 168.7 219 53.9
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 6.5e-40 168.3 224 51.8
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 7.2e-39 164.9 220 50.5
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 1.6e-38 163.7 221 52.5
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.7e-38 162.9 218 50.0
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 3.6e-38 162.5 224 50.0
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 7.9e-38 161.4 224 51.8
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 7.9e-38 161.4 219 51.6
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.4e-37 160.6 216 50.9
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 2.3e-37 159.8 217 51.6
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.0e-37 159.5 211 55.5
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.1e-36 157.5 187 54.0
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.5e-36 157.1 216 50.9
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.0e-36 156.8 211 55.0
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.4e-34 149.8 220 47.7
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 2.4e-34 149.8 199 54.3
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 7.0e-34 148.3 203 52.7
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.6e-33 147.1 217 48.4
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 2.0e-33 146.7 214 50.5
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 3.5e-33 146.0 212 50.9
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.3e-32 144.1 225 48.9
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 1.7e-32 143.7 220 50.0
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 2.2e-32 143.3 225 44.9
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 2.9e-32 142.9 227 47.1
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 6.5e-32 141.7 152 57.9
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 8.5e-32 141.4 224 46.4
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 3.2e-31 139.4 219 47.9
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.6e-30 137.1 214 47.7
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 4.7e-30 135.6 222 45.5
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 6.1e-30 135.2 211 47.9
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 3.3e-28 129.4 220 43.6
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.7e-27 127.1 222 43.7
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 1.7e-27 127.1 246 43.9
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.2e-27 126.7 222 47.3
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 1.1e-26 124.4 219 45.7
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 1.8e-26 123.6 226 42.0
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 3.1e-26 122.9 184 51.6
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 5.3e-26 122.1 195 45.1
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 5.3e-26 122.1 234 47.0
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 7.0e-26 121.7 187 47.1
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.2e-25 120.9 225 42.2
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 5.9e-25 118.6 200 47.5
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 2.2e-24 116.7 227 40.5
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 2.9e-24 116.3 225 41.3
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.1e-23 114.4 179 45.8
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.1e-23 114.4 179 45.8
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.1e-23 114.4 224 44.6
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.5e-23 114.0 214 42.5
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 1.5e-23 114.0 203 45.8
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.9e-23 113.6 197 46.7
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 5.5e-23 112.1 221 42.1
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 5.5e-23 112.1 123 54.5
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.2e-22 110.9 224 44.2
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 1.6e-22 110.5 230 43.9
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.8e-21 107.1 221 40.7
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.8e-21 107.1 221 40.7
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 1.8e-21 107.1 235 41.3
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 3.0e-21 106.3 222 40.5
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 3.0e-21 106.3 230 40.4
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 8.8e-21 104.8 227 40.1
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.5e-20 104.0 221 40.3
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 1.5e-20 104.0 224 40.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 3.4e-20 102.8 225 40.0
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 3.4e-20 102.8 221 39.8
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 1.7e-16 90.5 88 56.8
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 7.2e-15 85.1 109 55.0
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 1.2e-14 84.3 98 51.0
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 2.8e-14 83.2 202 39.6
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.0e-13 79.3 129 47.3
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 1.5e-12 77.4 195 35.4
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 9.8e-12 74.7 178 34.8
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 2.2e-11 73.6 158 40.5
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 2.2e-11 73.6 158 40.5
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 2.2e-11 73.6 158 40.5
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 1.1e-10 71.2 176 33.5
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 2.4e-10 70.1 220 33.6
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 3.1e-10 69.7 110 42.7
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 3.1e-10 69.7 110 42.7
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 4.1e-10 69.3 110 41.8
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 4.1e-10 69.3 110 41.8
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.3e-08 64.3 191 34.6
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.3e-08 64.3 82 46.3
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.3e-08 64.3 82 46.3
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 1.7e-08 63.9 213 33.3
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.0e-08 62.4 159 35.8
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 6.6e-08 62.0 227 36.6


User provided reference genes

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