Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1679.8 803 100.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1297.0 806 75.2
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1276.9 823 72.3
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1261.5 806 73.3
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1255.0 807 73.4
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1253.0 805 73.4
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1248.8 805 72.9
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1246.5 804 73.3
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1245.3 805 72.8
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1239.6 808 71.2
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1237.6 854 69.6
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1229.5 806 71.5
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1229.5 805 72.8
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1228.4 807 71.7
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1224.5 843 68.3
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1221.1 805 70.9
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1215.7 808 70.4
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1214.5 806 70.5
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1214.5 807 70.5
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1208.7 809 70.7
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1199.9 804 70.1
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1197.6 803 69.5
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1194.1 802 70.0
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1191.8 807 68.8
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1191.8 806 69.6
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1191.0 807 69.3
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1185.6 806 67.2
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1184.1 803 68.5
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1183.3 806 68.6
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1183.3 806 68.6
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1178.7 758 72.2
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1177.9 807 68.5
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1176.8 807 68.2
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1174.1 819 67.9
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1174.1 836 66.1
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1171.4 808 69.6
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1169.5 806 69.5
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1165.6 806 68.2
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1164.4 806 68.4
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1160.6 808 68.2
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1160.6 806 68.0
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1157.9 819 67.4
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1157.9 841 66.0
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1156.7 806 68.6
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1156.7 804 68.3
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1149.4 774 69.5
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1146.3 809 67.4
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1144.0 888 63.3
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1139.8 807 66.4
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1139.8 811 66.1
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1138.3 811 65.6
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 807 66.2
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1121.7 820 65.1
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1115.5 836 64.4
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1111.3 850 62.8
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 802 64.8
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1109.0 805 66.7
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1106.7 809 64.8
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1099.7 805 64.6
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1093.2 809 65.4
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1093.2 809 65.4
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1089.3 804 64.3
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1083.9 810 63.7
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1083.2 802 64.3
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1080.1 808 64.0
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1077.0 804 63.3
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 5.5e-312 1073.9 808 63.4
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 1.6e-311 1072.4 802 64.2
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 6.6e-311 1070.5 808 63.6
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 8.2e-311 1070.1 805 63.1
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 1.2e-309 1066.2 800 62.9
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 2.7e-309 1065.1 808 63.4
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 2.5e-307 1058.5 810 62.5
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 5.6e-307 1057.4 807 63.2
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 1.4e-305 1052.7 810 62.0
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.2e-304 1049.7 851 60.4
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 5.8e-304 1047.3 807 61.5
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 1.7e-303 1045.8 800 62.6
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 1.1e-302 1043.1 792 62.9
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 4.2e-302 1041.2 859 59.6
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.9e-300 1034.6 806 59.9
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.4e-294 1016.1 805 60.9
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 4.2e-294 1014.6 807 59.6
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 9.6e-291 1003.4 807 60.5
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.1e-283 979.9 713 67.7
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 5.9e-280 967.6 719 64.7
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 2.7e-269 932.2 730 62.6
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 6.9e-265 917.5 598 71.4
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 4.0e-252 875.2 603 70.5
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.4e-249 865.9 806 52.5
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 1.2e-243 847.0 605 66.9
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 7.5e-235 817.8 616 62.7
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.8e-212 743.4 598 60.4
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 4.9e-210 735.3 825 46.7
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 6.6e-199 698.4 835 44.8
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 4.7e-197 692.2 826 44.1
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 1.2e-195 687.6 460 70.9
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 8.4e-170 601.7 530 56.4
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.1e-164 582.8 458 61.8
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 7.2e-153 545.4 593 46.5
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 6.1e-144 515.8 398 64.6
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 1.3e-141 508.1 375 63.7
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 6.1e-136 489.2 459 52.7
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.2e-134 485.0 446 54.9
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.5e-129 467.2 465 51.2
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 3.6e-128 463.4 314 70.1
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 7.5e-110 402.5 339 59.9
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.2e-93 347.8 306 59.2
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 5.1e-90 336.7 192 76.0
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 8.7e-82 309.3 232 62.5
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.2e-77 294.7 266 55.3
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 7.1e-68 263.1 492 34.1
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.2e-67 262.3 146 76.7
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 3.8e-61 240.7 149 70.5
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 5.5e-52 210.3 194 51.0
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.2e-51 209.1 123 70.7
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 1.6e-48 198.7 853 25.4
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 1.0e-42 179.5 147 53.7
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.8e-42 178.7 190 49.5
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.2e-36 156.8 93 66.7
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 1.1e-31 142.9 92 69.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.2e-22 112.8 197 35.0
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 7.7e-22 110.2 54 81.5
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 3.5e-14 84.7 117 38.5
BolC3t16166H Brassica oleracea HOM05D001597 ORTHO05D001512 6.3e-08 63.9 274 27.4
A03p31920 Brassica napus HOM05D001597 ORTHO05D001512 8.3e-08 63.5 225 28.9
BcaC01g06849 Brassica carinata HOM05D001597 ORTHO05D001512 1.8e-07 62.4 274 27.7
C03p38940 Brassica napus HOM05D001597 ORTHO05D001512 1.8e-07 62.4 274 27.7
BraA03t12364Z Brassica rapa HOM05D001597 ORTHO05D001512 1.8e-07 62.4 221 29.0
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 2.4e-07 62.0 52 57.7
COL.COLO4_38202 Corchorus olitorius HOM05D002006 ORTHO05D002128 4.1e-07 61.2 311 24.1
Os07g0258700 Oryza sativa ssp. japonica HOM05D003949 ORTHO05D004504 4.5e-06 57.8 84 35.7


User provided reference genes

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