Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00260 Coffea canephora HOM05D006984 ORTHO05D008773 1.3e-168 596.3 298 100.0
Peaxi162Scf00064g01321 Petunia axillaris HOM05D006984 ORTHO05D008773 5.7e-79 298.5 208 74.5
Solyc12g094720.3 Solanum lycopersicum HOM05D006984 ORTHO05D008773 2.2e-78 296.6 208 74.5
Sopen12g031620 Solanum pennellii HOM05D006984 ORTHO05D008773 2.8e-78 296.2 238 67.6
PGSC0003DMG400029399 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.7e-78 295.8 208 74.5
CAN.G208.41 Capsicum annuum HOM05D006984 ORTHO05D008773 4.8e-78 295.4 257 62.6
Dinv13757 Davidia involucrata HOM05D006984 ORTHO05D008773 1.8e-77 293.5 208 71.6
Lj3P797T41 Lonicera japonica HOM05D006984 ORTHO05D008773 2.0e-76 290.0 171 81.9
Lj4A811G120 Lonicera japonica HOM05D006984 ORTHO05D008773 1.3e-75 287.3 159 85.5
MSTRG.24516 Avicennia marina HOM05D006984 ORTHO05D008773 1.7e-75 287.0 258 60.9
CSS0020436 Camellia sinensis var. sinensis HOM05D006984 ORTHO05D008773 3.8e-75 285.8 206 68.4
vmacro21767 Vaccinium macrocarpon HOM05D006984 ORTHO05D008773 1.1e-74 284.3 225 64.9
Lsat_1_v5_gn_9_48361 Lactuca sativa HOM05D006984 ORTHO05D008773 4.2e-74 282.3 207 68.1
Oeu035863.2 Olea europaea HOM05D006984 ORTHO05D008773 4.2e-74 282.3 207 69.1
HanXRQChr09g0241901 Helianthus annuus HOM05D006984 ORTHO05D008773 1.6e-73 280.4 161 78.3
Nn6g31626 Nelumbo nucifera HOM05D006984 ORTHO05D008773 1.6e-73 280.4 227 63.0
TAR628G1538 Trochodendron aralioides HOM05D006984 ORTHO05D008773 2.7e-73 279.6 178 74.2
AUR62024096 Chenopodium quinoa HOM05D006984 ORTHO05D008773 3.6e-73 279.3 218 62.8
Actinidia17077 Actinidia chinensis HOM05D006984 ORTHO05D008773 4.6e-73 278.9 161 80.1
Duzib116G0393 Durio zibethinus HOM05D006984 ORTHO05D008773 4.6e-73 278.9 215 66.0
GSVIVG01013427001 Vitis vinifera HOM05D006984 ORTHO05D008773 4.6e-73 278.9 170 77.1
AUR62035170 Chenopodium quinoa HOM05D006984 ORTHO05D008773 7.9e-73 278.1 268 54.5
Migut.N02987 Erythranthe guttata HOM05D006984 ORTHO05D008773 1.0e-72 277.7 176 75.6
QL02p015743 Quercus lobata HOM05D006984 ORTHO05D008773 1.4e-72 277.3 279 53.0
Cpa.g.sc26.14 Carica papaya HOM05D006984 ORTHO05D008773 1.8e-72 276.9 208 66.3
Nitab4.5_0000407g0010 Nicotiana tabacum HOM05D006984 ORTHO05D008773 1.8e-72 276.9 191 72.8
Sc15g0004070 Simmondsia chinensis HOM05D006984 ORTHO05D008773 1.8e-72 276.9 161 80.1
ECA232G4329 Erigeron canadensis HOM05D006984 ORTHO05D008773 1.5e-71 273.9 161 76.4
Potri.005G256600 Populus trichocarpa HOM05D006984 ORTHO05D008773 2.0e-71 273.5 160 80.0
Atru.chr13.60 Acer truncatum HOM05D006984 ORTHO05D008773 2.6e-71 273.1 273 54.2
CiPaw.07G133500 Carya illinoinensis HOM05D006984 ORTHO05D008773 2.6e-71 273.1 215 64.7
Thecc.08G099800 Theobroma cacao HOM05D006984 ORTHO05D008773 1.7e-70 270.4 200 67.5
EL10Ac1g01871 Beta vulgaris HOM05D006984 ORTHO05D008773 2.8e-70 269.6 186 69.4
Hund01834 Selenicereus undatus HOM05D006984 ORTHO05D008773 4.1e-69 265.8 180 68.9
SGA_v2.0_scaffold220G42646 Striga asiatica HOM05D006984 ORTHO05D008773 4.1e-69 265.8 197 67.0
Manes.05G127800 Manihot esculenta HOM05D006984 ORTHO05D008773 5.3e-69 265.4 221 62.4
Sabra05G0198700 Salix brachista HOM05D006984 ORTHO05D008773 5.3e-69 265.4 208 64.4
unitig_22.g5726 Utricularia gibba HOM05D006984 ORTHO05D008773 5.3e-69 265.4 237 60.3
Hma1.2p1_0489F.1_g164090 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 9.1e-69 264.6 195 67.7
Ciclev10001894m.g Citrus clementina HOM05D006984 ORTHO05D008773 2.0e-68 263.5 264 51.9
Cfa014138 Carpinus fangiana HOM05D006984 ORTHO05D008773 2.6e-68 263.1 179 71.5
Gohir.D01G180900 Gossypium hirsutum HOM05D006984 ORTHO05D008773 3.4e-68 262.7 211 65.4
VMungo1309G1928 Vigna mungo HOM05D006984 ORTHO05D008773 3.4e-68 262.7 206 62.1
Gorai.002G221600 Gossypium raimondii HOM05D006984 ORTHO05D008773 4.5e-68 262.3 211 65.4
TWI56G0056 Tripterygium wilfordii HOM05D006984 ORTHO05D008773 5.9e-68 261.9 205 61.5
MD16G1283100 Malus domestica HOM05D006984 ORTHO05D008773 2.2e-67 260.0 259 54.1
Gohir.A01G188600 Gossypium hirsutum HOM05D006984 ORTHO05D008773 3.8e-67 259.2 211 64.5
AT1G76450 Arabidopsis thaliana HOM05D006984 ORTHO05D008773 6.5e-67 258.5 219 60.3
Lj1g0018204 Lotus japonicus HOM05D006984 ORTHO05D008773 8.5e-67 258.1 160 71.9
AL2G36590 Arabidopsis lyrata HOM05D006984 ORTHO05D008773 1.1e-66 257.7 236 57.2
Glyma.04G014500 Glycine max HOM05D006984 ORTHO05D008773 1.1e-66 257.7 212 59.4
Glyma.06G014500 Glycine max HOM05D006984 ORTHO05D008773 1.9e-66 256.9 209 59.3
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 3.2e-66 256.1 169 69.2
Phvul.009G008400 Phaseolus vulgaris HOM05D006984 ORTHO05D008773 7.2e-66 255.0 203 61.1
FAN18G2056 Fragaria x ananassa HOM05D006984 ORTHO05D008773 9.4e-66 254.6 163 74.2
MBI04_g31208_MAGBIO Magnolia biondii HOM05D006984 ORTHO05D008773 9.4e-66 254.6 174 70.1
RcHm_v2.0_Chr7g0216691 Rosa chinensis HOM05D006984 ORTHO05D008773 9.4e-66 254.6 173 68.8
Sp5g31620 Schrenkiella parvula HOM05D006984 ORTHO05D008773 9.4e-66 254.6 219 58.4
CARHR070010 Cardamine hirsuta HOM05D006984 ORTHO05D008773 1.6e-65 253.8 239 56.9
Aa31LG4G6540 Aethionema arabicum HOM05D006984 ORTHO05D008773 2.7e-65 253.1 206 59.7
CDE05G0055 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 2.7e-65 253.1 165 69.7
Ca_15385_v3 Cicer arietinum L. HOM05D006984 ORTHO05D008773 2.7e-65 253.1 159 71.7
Haze_22863 Corylus avellana HOM05D006984 ORTHO05D008773 3.6e-65 252.7 236 57.6
CsaV3_6G035930 Cucumis sativus L. HOM05D006984 ORTHO05D008773 3.6e-65 252.7 165 67.9
FvH4_5g26100 Fragaria vesca HOM05D006984 ORTHO05D008773 4.7e-65 252.3 163 73.6
Carub.0002s2337 Capsella rubella HOM05D006984 ORTHO05D008773 7.9e-65 251.5 265 52.8
PSO541G1597 Papaver somniferum HOM05D006984 ORTHO05D008773 1.0e-64 251.1 259 51.4
CANSAT25G0748 Cannabis sativa HOM05D006984 ORTHO05D008773 1.4e-64 250.8 177 65.0
MELO3C026518.2 Cucumis melo HOM05D006984 ORTHO05D008773 1.8e-64 250.4 165 67.9
Medtr3g116110 Medicago truncatula HOM05D006984 ORTHO05D008773 6.7e-64 248.4 184 62.5
BcaC08g47243 Brassica carinata HOM05D006984 ORTHO05D008773 8.8e-64 248.1 208 59.1
COL.COLO4_12298 Corchorus olitorius HOM05D006984 ORTHO05D008773 1.5e-63 247.3 215 59.5
BraA07t31741Z Brassica rapa HOM05D006984 ORTHO05D008773 2.0e-63 246.9 219 57.5
TPR.G38185 Trifolium pratense HOM05D006984 ORTHO05D008773 2.0e-63 246.9 187 60.4
arahy.Tifrunner.gnm1.ann1.H7AW2T Arachis hypogaea HOM05D006984 ORTHO05D008773 4.4e-63 245.7 236 54.2
Psat5g008560 Pisum sativum HOM05D006984 ORTHO05D008773 4.4e-63 245.7 198 59.1
arahy.Tifrunner.gnm1.ann1.QT2TB5 Arachis hypogaea HOM05D006984 ORTHO05D008773 1.3e-62 244.2 237 53.6
BolC6t40095H Brassica oleracea HOM05D006984 ORTHO05D008773 1.3e-62 244.2 208 58.2
CDE05G2674 Ceratophyllum demersum HOM05D006984 ORTHO05D008773 1.3e-62 244.2 186 62.9
Aqoxy6G02992 Aquilegia oxysepala HOM05D006984 ORTHO05D008773 2.2e-62 243.4 247 51.0
BcaC08g47152 Brassica carinata HOM05D006984 ORTHO05D008773 8.2e-62 241.5 220 55.9
Lalb_Chr23g0265511 Lupinus albus HOM05D006984 ORTHO05D008773 1.1e-61 241.1 228 55.7
Os08g0512500 Oryza sativa ssp. japonica HOM05D006984 ORTHO05D008773 1.1e-61 241.1 185 62.2
Sed0024892 Sechium edule HOM05D006984 ORTHO05D008773 1.1e-61 241.1 156 67.9
Eucgr.F01822 Eucalyptus grandis HOM05D006984 ORTHO05D008773 1.8e-61 240.4 157 68.8
Prupe.5G005500 Prunus persica HOM05D006984 ORTHO05D008773 1.8e-61 240.4 207 61.4
A07p42120 Brassica napus HOM05D006984 ORTHO05D008773 7.0e-61 238.4 217 54.8
ATR0001G027 Amborella trichopoda HOM05D006984 ORTHO05D008773 3.5e-60 236.1 165 66.7
C06p50690 Brassica napus HOM05D006984 ORTHO05D008773 1.0e-59 234.6 199 57.8
FAN13G1472 Fragaria x ananassa HOM05D006984 ORTHO05D008773 1.7e-59 233.8 196 61.2
Thhalv10019042m.g Eutrema salsugineum HOM05D006984 ORTHO05D008773 5.0e-59 232.3 207 57.0
PGR083G2821 Punica granatum HOM05D006984 ORTHO05D008773 1.9e-58 230.3 146 72.6
FAN08G1099 Fragaria x ananassa HOM05D006984 ORTHO05D008773 3.6e-57 226.1 154 70.8
Hma1.2p1_0489F.1_g164100 Hydrangea macrophylla HOM05D006984 ORTHO05D008773 3.6e-57 226.1 120 85.8
Rhsim06G0003200 Rhododendron simsii HOM05D006984 ORTHO05D008773 1.4e-56 224.2 331 43.2
FAN04G1410 Fragaria x ananassa HOM05D006984 ORTHO05D008773 4.0e-56 222.6 163 68.1
Nitab4.5_0003423g0020 Nicotiana tabacum HOM05D006984 ORTHO05D008773 7.5e-55 218.4 244 54.5
ClCG08G009180 Citrullus lanatus HOM05D006984 ORTHO05D008773 3.7e-54 216.1 161 62.7
Mapoly0008s0218 Marchantia polymorpha HOM05D006984 ORTHO05D008773 7.7e-52 208.4 162 56.2
Pp3c4_15070 Physcomitrium patens HOM05D006984 ORTHO05D008773 7.2e-50 201.8 187 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1863 Anthoceros agrestis HOM05D006984 ORTHO05D008773 1.1e-45 188.0 164 51.8
Ah.11g041950 Amaranthus hybridus HOM05D006984 ORTHO05D008773 8.5e-43 178.3 134 65.7
SMO245G0004 Selaginella moellendorffii HOM05D006984 ORTHO05D008773 8.8e-40 168.3 164 43.9
CBR_g51937 Chara braunii HOM05D006984 ORTHO05D008773 1.2e-36 157.9 211 38.9
Zm00001eb035340 Zea mays HOM05D006984 ORTHO05D008773 1.1e-34 151.4 144 54.9
PGSC0003DMG400021762 Solanum tuberosum HOM05D006984 ORTHO05D008773 3.5e-28 129.8 90 73.3
PGSC0003DMG400008742 Solanum tuberosum HOM05D006984 ORTHO05D008773 4.6e-28 129.4 120 62.5
Cre10.g446350 Chlamydomonas reinhardtii HOM05D006984 ORTHO05D008773 5.2e-24 115.9 238 33.6
Medtr6g034285 Medicago truncatula HOM05D000394 ORTHO05D008773 5.8e-23 112.5 66 71.2
MCO13G452 Micromonas commoda HOM05D006984 ORTHO05D008773 1.3e-22 111.3 170 35.9
PRCOL_00004638 Prasinoderma coloniale HOM05D006984 ORTHO05D008773 2.9e-22 110.2 163 38.7
Sopen12g026780 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-21 105.9 77 68.8
Psat7g136640 Pisum sativum HOM05D006984 ORTHO05D008773 3.0e-11 73.6 104 40.4
HPP92_015474 Vanilla planifolia HOM05D006984 ORTHO05D008773 5.6e-10 69.3 50 60.0
Psat6g152440 Pisum sativum HOM05D006984 ORTHO05D000789 8.9e-08 62.0 38 71.1
Psat6g152480 Pisum sativum HOM05D006984 ORTHO05D008773 4.4e-07 59.7 32 78.1


User provided reference genes

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