Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 5.5e-50 200.7 101 100.0
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 4.5e-36 154.5 87 82.8
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 5.0e-35 151.0 100 77.0
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 8.4e-35 150.2 87 81.6
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 8.4e-35 150.2 100 77.0
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 8.4e-35 150.2 98 77.6
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 2.5e-34 148.7 87 79.3
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 5.5e-34 147.5 97 76.3
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 2.7e-33 145.2 96 77.1
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 1.3e-32 142.9 87 81.6
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 1.8e-32 142.5 94 74.5
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 1.1e-31 139.8 85 78.8
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 1.5e-31 139.4 87 75.9
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 1.5e-31 139.4 95 73.7
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 1.5e-31 139.4 92 73.9
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 2.5e-31 138.7 87 72.4
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 2.5e-31 138.7 87 74.7
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 2.5e-31 138.7 87 74.7
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 4.3e-31 137.9 86 76.7
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 5.7e-31 137.5 94 74.5
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 5.7e-31 137.5 90 74.4
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 7.4e-31 137.1 96 72.9
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 7.4e-31 137.1 94 73.4
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 1.3e-30 136.3 90 72.2
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.3e-30 136.3 90 72.2
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.3e-30 136.3 90 72.2
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 1.6e-30 136.0 95 71.6
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 1.6e-30 136.0 83 77.1
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 1.6e-30 136.0 86 80.2
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 3.7e-30 134.8 94 70.2
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 4.8e-30 134.4 87 73.6
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 4.8e-30 134.4 87 73.6
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 4.8e-30 134.4 85 77.6
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 4.8e-30 134.4 95 70.5
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 4.8e-30 134.4 84 76.2
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 4.8e-30 134.4 87 74.7
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 4.8e-30 134.4 81 75.3
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 6.3e-30 134.0 85 77.6
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 6.3e-30 134.0 96 70.8
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 8.2e-30 133.7 91 73.6
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 8.2e-30 133.7 96 69.8
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.1e-29 133.3 90 71.1
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 1.1e-29 133.3 102 72.5
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 1.4e-29 132.9 97 69.1
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 1.4e-29 132.9 97 69.1
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 1.4e-29 132.9 97 69.1
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 1.8e-29 132.5 91 71.4
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 2.4e-29 132.1 94 69.1
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 2.4e-29 132.1 85 76.5
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 2.4e-29 132.1 90 71.1
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 6.9e-29 130.6 97 68.0
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 6.9e-29 130.6 86 72.1
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 6.9e-29 130.6 81 79.0
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 6.9e-29 130.6 90 72.2
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 1.5e-28 129.4 100 70.0
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 1.5e-28 129.4 104 66.3
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 2.0e-28 129.0 88 70.5
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 2.6e-28 128.6 87 71.3
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 4.5e-28 127.9 87 72.4
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 5.9e-28 127.5 78 73.1
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 5.9e-28 127.5 90 71.1
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 5.9e-28 127.5 87 71.3
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 1.0e-27 126.7 93 68.8
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 1.3e-27 126.3 97 68.0
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 1.3e-27 126.3 120 58.3
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 2.2e-27 125.6 91 71.4
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 2.9e-27 125.2 79 72.2
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 2.9e-27 125.2 85 72.9
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 3.8e-27 124.8 97 66.0
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 3.8e-27 124.8 85 71.8
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 6.5e-27 124.0 83 72.3
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 8.5e-27 123.6 85 70.6
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 1.9e-26 122.5 91 68.1
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 1.9e-26 122.5 83 67.5
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 1.9e-26 122.5 93 67.7
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 1.9e-26 122.5 85 71.8
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 3.2e-26 121.7 83 68.7
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 4.2e-26 121.3 96 66.7
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 4.2e-26 121.3 77 76.6
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 5.5e-26 120.9 87 70.1
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 5.5e-26 120.9 96 66.7
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 5.5e-26 120.9 83 66.3
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 7.2e-26 120.6 87 67.8
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 1.2e-25 119.8 87 66.7
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 1.6e-25 119.4 87 70.1
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 2.1e-25 119.0 97 64.9
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 2.1e-25 119.0 97 64.9
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 2.1e-25 119.0 97 64.9
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 2.1e-25 119.0 97 64.9
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 2.7e-25 118.6 101 67.3
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 3.6e-25 118.2 82 70.7
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 4.6e-25 117.9 100 65.0
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 4.6e-25 117.9 96 65.6
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 4.6e-25 117.9 97 63.9
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 6.1e-25 117.5 82 70.7
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 1.0e-24 116.7 100 65.0
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 1.0e-24 116.7 100 65.0
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 3.9e-24 114.8 92 65.2
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 5.1e-24 114.4 69 78.3
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 4.3e-23 111.3 77 72.7
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 1.7e-22 109.4 77 71.4
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 8.2e-22 107.1 95 66.3
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 1.1e-21 106.7 69 75.4
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 1.5e-20 102.8 63 76.2
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.5e-20 102.8 95 57.9
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 1.7e-19 99.4 73 69.9
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 2.9e-19 98.6 75 58.7
BcaC01g05833 Brassica carinata HOM05D006709 ORTHO05D008329 1.1e-18 96.7 87 58.6
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 2.6e-15 85.5 81 48.1
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 4.8e-14 81.3 60 68.3
Pp3c1_9780 Physcomitrium patens HOM05D006709 ORTHO05D008329 1.1e-13 80.1 83 48.2
DCAR_016802 Daucus carota HOM05D006709 ORTHO05D008329 1.2e-12 76.6 64 57.8
vmacro04272 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 5.9e-12 74.3 112 44.6
SalBow1G7713 Salvia bowleyana HOM05D006709 ORTHO05D008329 2.2e-11 72.4 46 71.7
AUR62035175 Chenopodium quinoa HOM05D006709 ORTHO05D008329 6.1e-09 64.3 41 73.2
DCAR_023021 Daucus carota HOM05D006709 ORTHO05D008329 5.2e-08 61.2 73 45.2
SHI07946 Sapria himalayana HOM05D006709 ORTHO05D008329 6.7e-08 60.8 63 55.6
SalBow8G3647 Salvia bowleyana HOM05D006709 ORTHO05D008329 8.8e-08 60.5 38 68.4
CBR_g27877 Chara braunii HOM05D006709 ORTHO05D008329 2.0e-07 59.3 53 49.1


User provided reference genes

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