Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.1e-86 323.2 159 100.0
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.3e-77 293.1 146 89.7
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 1.8e-76 289.3 146 88.4
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 2.4e-76 288.9 145 89.7
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 7.0e-76 287.3 147 86.4
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 1.6e-75 286.2 144 88.9
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.6e-75 286.2 146 87.7
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 2.0e-75 285.8 144 87.5
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 3.5e-75 285.0 145 87.6
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 4.5e-75 284.6 146 86.3
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 4.5e-75 284.6 144 87.5
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 4.5e-75 284.6 144 87.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 5.9e-75 284.3 146 87.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 5.9e-75 284.3 157 82.8
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 7.7e-75 283.9 145 86.9
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.0e-74 283.5 146 87.7
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.0e-74 283.5 144 87.5
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.3e-74 283.1 144 86.8
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.7e-74 282.7 146 87.0
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.2e-74 282.3 147 85.7
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 3.8e-74 281.6 146 85.6
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.8e-74 281.6 144 87.5
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 5.0e-74 281.2 146 85.6
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 5.0e-74 281.2 144 86.8
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 6.5e-74 280.8 146 85.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 6.5e-74 280.8 146 86.3
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.5e-74 280.8 143 86.7
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 8.5e-74 280.4 158 80.4
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 8.5e-74 280.4 146 87.0
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.9e-73 279.3 146 84.9
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 2.5e-73 278.9 146 84.9
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 2.5e-73 278.9 146 84.9
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.5e-73 278.9 146 85.6
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.5e-73 278.9 144 86.8
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 3.2e-73 278.5 145 86.2
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 5.5e-73 277.7 147 84.4
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 5.5e-73 277.7 147 84.4
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 5.5e-73 277.7 145 84.8
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 5.5e-73 277.7 145 85.5
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 5.5e-73 277.7 146 84.2
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 7.2e-73 277.3 147 84.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 9.4e-73 276.9 147 83.7
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 9.4e-73 276.9 180 73.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 9.4e-73 276.9 146 84.2
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-72 276.6 147 83.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.2e-72 276.6 147 84.4
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 1.2e-72 276.6 147 84.4
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.2e-72 276.6 146 84.9
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.6e-72 276.2 144 86.8
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 3.6e-72 275.0 147 83.0
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 4.7e-72 274.6 175 74.3
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 4.7e-72 274.6 147 83.7
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 4.7e-72 274.6 145 84.1
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.0e-71 273.5 157 79.0
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.8e-71 272.7 157 79.0
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 3.0e-71 271.9 144 82.6
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 3.0e-71 271.9 144 82.6
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.0e-71 271.9 143 85.3
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 3.0e-71 271.9 147 82.3
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 5.2e-71 271.2 146 82.9
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.2e-71 271.2 147 82.3
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 5.2e-71 271.2 144 84.0
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 6.8e-71 270.8 146 83.6
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.8e-71 270.8 146 83.6
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 6.8e-71 270.8 144 81.2
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 8.8e-71 270.4 144 81.2
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.8e-71 270.4 146 83.6
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.5e-70 269.6 146 82.2
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.5e-70 269.6 148 83.1
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.6e-70 268.9 144 81.2
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 4.4e-70 268.1 146 82.9
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.8e-70 266.9 141 81.6
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.7e-69 266.2 144 82.6
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.2e-69 265.8 143 83.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.2e-69 265.8 144 81.9
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 2.2e-69 265.8 142 81.0
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 2.8e-69 265.4 143 83.2
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 2.8e-69 265.4 143 83.2
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.8e-69 265.4 142 85.2
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 6.3e-69 264.2 145 81.4
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 8.3e-69 263.8 143 82.5
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.4e-68 263.1 147 80.3
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.8e-68 262.7 142 81.7
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 7.0e-68 260.8 140 85.0
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 7.7e-67 257.3 142 80.3
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.2e-64 250.0 140 77.1
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.6e-64 248.4 144 75.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.1e-64 247.7 140 73.6
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.4e-63 246.5 120 94.2
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 4.0e-63 245.0 127 87.4
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.2e-62 243.4 140 75.0
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 2.6e-62 242.3 122 90.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 1.3e-61 240.0 140 78.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 6.3e-61 237.7 126 84.1
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 2.4e-60 235.7 133 80.5
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 4.1e-60 235.0 127 83.5
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 7.0e-60 234.2 120 88.3
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.2e-59 233.4 122 87.7
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.2e-59 233.4 119 88.2
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.7e-58 229.6 132 78.0
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.5e-57 226.5 140 75.7
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.6e-56 223.0 121 83.5
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.8e-56 222.2 164 66.5
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 8.0e-56 220.7 140 69.3
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.4e-55 219.9 120 82.5
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 2.6e-54 215.7 108 91.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 4.9e-53 211.5 130 75.4
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.6e-51 206.5 108 86.1
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 8.6e-50 200.7 107 82.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 3.1e-47 192.2 99 84.8
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 3.0e-42 175.6 91 89.0
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.5e-41 172.6 116 70.7
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.5e-41 172.6 88 88.6
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 2.5e-41 172.6 90 87.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 7.3e-41 171.0 140 52.1
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 6.2e-40 167.9 139 54.0
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.8e-39 166.4 140 55.0
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.5e-38 163.3 146 54.1
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 3.4e-38 162.2 145 53.1
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 9.2e-36 154.1 140 51.4
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 8.6e-34 147.5 140 47.1
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 9.5e-33 144.1 144 54.9
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 1.4e-31 140.2 136 50.0
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 4.4e-30 135.2 85 69.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 2.4e-28 129.4 149 44.3
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.2e-28 129.0 72 83.3
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.0e-26 122.5 70 81.4
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 9.6e-25 117.5 59 84.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.2e-22 110.5 118 46.6
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-20 104.0 53 84.9
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.5e-17 93.6 147 40.8
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 3.4e-14 82.4 88 48.9
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 8.7e-10 67.8 31 90.3
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.5e-09 66.2 141 31.2
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 4.3e-09 65.5 78 46.2
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 2.1e-08 63.2 73 47.9
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 2.4e-07 59.7 127 29.1
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 6.9e-07 58.2 94 35.1
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 1.5e-06 57.0 147 28.6


User provided reference genes

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