Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g10850 Coffea canephora HOM05D001116 ORTHO05D154406 8.9e-57 223.4 114 100.0
Sed0025935 Sechium edule HOM05D001116 ORTHO05D001028 4.4e-24 114.8 115 57.4
Atru.chr5.3563 Acer truncatum HOM05D001116 ORTHO05D001028 5.8e-24 114.4 115 58.3
CSS0002356 Camellia sinensis var. sinensis HOM05D001116 ORTHO05D001028 2.2e-23 112.5 115 55.7
Hund06360 Selenicereus undatus HOM05D001116 ORTHO05D001028 2.2e-23 112.5 115 54.8
Ciclev10028883m.g Citrus clementina HOM05D001116 ORTHO05D001028 2.9e-23 112.1 115 58.3
RcHm_v2.0_Chr6g0281001 Rosa chinensis HOM05D001116 ORTHO05D001028 3.8e-23 111.7 115 56.5
MD10G1142200 Malus domestica HOM05D001116 ORTHO05D001028 4.9e-23 111.3 115 57.4
Actinidia32007 Actinidia chinensis HOM05D001116 ORTHO05D001028 6.4e-23 110.9 115 55.7
vmacro17309 Vaccinium macrocarpon HOM05D001116 ORTHO05D001028 6.4e-23 110.9 116 55.2
Dinv14177 Davidia involucrata HOM05D001116 ORTHO05D001028 8.4e-23 110.5 115 55.7
EL10Ac9g21541 Beta vulgaris HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 53.0
ECA246G1686 Erigeron canadensis HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 55.7
Lsat_1_v5_gn_0_46081 Lactuca sativa HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 58.3
Lsat_1_v5_gn_3_48521 Lactuca sativa HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 58.3
Rhsim05G0046500 Rhododendron simsii HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 54.8
RhsimUnG0141000 Rhododendron simsii HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 54.8
RhsimUnG0170700 Rhododendron simsii HOM05D001116 ORTHO05D001028 1.4e-22 109.8 115 54.8
MD05G1139900 Malus domestica HOM05D001116 ORTHO05D001028 1.9e-22 109.4 115 56.5
Prupe.8G180700 Prunus persica HOM05D001116 ORTHO05D001028 1.9e-22 109.4 115 56.5
Ah.01g017610 Amaranthus hybridus HOM05D000059 ORTHO05D000128 2.4e-22 109.0 115 53.0
Manes.15G114500 Manihot esculenta HOM05D001116 ORTHO05D001028 2.4e-22 109.0 115 53.0
Duzib132G0207 Durio zibethinus HOM05D001116 ORTHO05D001028 3.2e-22 108.6 115 54.8
FAN15G0211 Fragaria x ananassa HOM05D001116 ORTHO05D001028 3.2e-22 108.6 115 53.9
FAN24G2084 Fragaria x ananassa HOM05D001116 ORTHO05D001028 3.2e-22 108.6 115 53.9
Gohir.A12G013000 Gossypium hirsutum HOM05D001116 ORTHO05D001028 3.2e-22 108.6 115 53.9
Gorai.008G013800 Gossypium raimondii HOM05D001116 ORTHO05D001028 3.2e-22 108.6 115 53.9
Oeu003427.1 Olea europaea HOM05D001116 ORTHO05D001028 3.2e-22 108.6 115 55.7
AL3G50140 Arabidopsis lyrata HOM05D001116 ORTHO05D001028 4.2e-22 108.2 114 53.5
FvH4_2g16870 Fragaria vesca HOM05D001116 ORTHO05D001028 4.2e-22 108.2 115 53.0
Thecc.02G146600 Theobroma cacao HOM05D001116 ORTHO05D001028 4.2e-22 108.2 115 55.7
TPR.G18646 Trifolium pratense HOM05D001116 ORTHO05D001028 4.2e-22 108.2 115 54.8
BcaB08g34720 Brassica carinata HOM05D001116 ORTHO05D001028 5.4e-22 107.8 114 54.4
AUR62010179 Chenopodium quinoa HOM05D001116 ORTHO05D001028 5.4e-22 107.8 115 53.0
ClCG02G003350 Citrullus lanatus HOM05D001116 ORTHO05D001028 5.4e-22 107.8 115 54.8
COL.COLO4_34314 Corchorus olitorius HOM05D001116 ORTHO05D001028 5.4e-22 107.8 115 53.0
Sp3g30620 Schrenkiella parvula HOM05D001116 ORTHO05D001028 5.4e-22 107.8 114 54.4
Eucgr.H04990 Eucalyptus grandis HOM05D001116 ORTHO05D001028 7.1e-22 107.5 115 53.9
Eucgr.L00580 Eucalyptus grandis HOM05D001116 ORTHO05D001028 7.1e-22 107.5 115 53.9
Gohir.D12G013800 Gossypium hirsutum HOM05D001116 ORTHO05D001028 7.1e-22 107.5 115 53.0
DCAR_003468 Daucus carota HOM05D001116 ORTHO05D001028 9.3e-22 107.1 115 54.8
CiPaw.06G115000 Carya illinoinensis HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 55.7
AUR62013180 Chenopodium quinoa HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 52.2
FAN27G1008 Fragaria x ananassa HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 53.0
Nn5g31031 Nelumbo nucifera HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 51.3
QL11p056489 Quercus lobata HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 55.7
Sabra04G0139500 Salix brachista HOM05D001116 ORTHO05D001028 1.2e-21 106.7 116 54.3
THA.LOC104807407 Tarenaya hassleriana HOM05D001116 ORTHO05D001028 1.2e-21 106.7 114 53.5
TWI31G0457 Tripterygium wilfordii HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 52.2
TAR625G0120 Trochodendron aralioides HOM05D001116 ORTHO05D001028 1.2e-21 106.7 115 52.2
PGR042G3264 Punica granatum HOM05D001116 ORTHO05D001028 1.6e-21 106.3 115 53.9
AT2G17270 Arabidopsis thaliana HOM05D001116 ORTHO05D001028 2.1e-21 105.9 114 53.5
CsaV3_7G001980 Cucumis sativus L. HOM05D001116 ORTHO05D001028 2.1e-21 105.9 115 54.8
SGA_v2.0_scaffold98G29304 Striga asiatica HOM05D001116 ORTHO05D001028 2.1e-21 105.9 115 53.9
Aa31LG8G14640 Aethionema arabicum HOM05D001116 ORTHO05D001028 2.7e-21 105.5 114 52.6
MSTRG.27613 Avicennia marina HOM05D001116 ORTHO05D001028 2.7e-21 105.5 115 54.8
MELO3C028882.2 Cucumis melo HOM05D001116 ORTHO05D001028 2.7e-21 105.5 115 54.8
Thhalv10022786m.g Eutrema salsugineum HOM05D001116 ORTHO05D001028 2.7e-21 105.5 114 52.6
GSVIVG01023867001 Vitis vinifera HOM05D001116 ORTHO05D001028 2.7e-21 105.5 114 54.4
PGSC0003DMG401014665 Solanum tuberosum HOM05D001116 ORTHO05D001028 4.6e-21 104.8 115 54.8
ATR0807G151 Amborella trichopoda HOM05D001116 ORTHO05D001028 6.0e-21 104.4 115 50.4
Eucgr.J02555 Eucalyptus grandis HOM05D001116 ORTHO05D001028 6.0e-21 104.4 115 47.8
BcaC01g02940 Brassica carinata HOM05D001116 ORTHO05D001028 7.8e-21 104.0 114 52.6
A06p34110 Brassica napus HOM05D001116 ORTHO05D001028 7.8e-21 104.0 114 52.6
C03p58100 Brassica napus HOM05D001116 ORTHO05D001028 7.8e-21 104.0 114 52.6
BolC3t18082H Brassica oleracea HOM05D001116 ORTHO05D001028 7.8e-21 104.0 114 52.6
BraA06t26344Z Brassica rapa HOM05D001116 ORTHO05D001028 7.8e-21 104.0 114 52.6
Carub.0003s3122 Capsella rubella HOM05D001116 ORTHO05D001028 1.0e-20 103.6 114 51.8
Manes.02G115800 Manihot esculenta HOM05D001116 ORTHO05D001028 1.0e-20 103.6 115 50.4
Peaxi162Scf01393g00017 Petunia axillaris HOM05D001116 ORTHO05D001028 1.0e-20 103.6 114 50.9
Psat2g000640 Pisum sativum HOM05D001116 ORTHO05D001028 1.0e-20 103.6 116 51.7
Duzib248G0581 Durio zibethinus HOM05D001116 ORTHO05D001028 1.3e-20 103.2 115 51.3
Potri.004G207200 Populus trichocarpa HOM05D001116 ORTHO05D001028 1.3e-20 103.2 115 51.3
CAN.G647.1 Capsicum annuum HOM05D001116 ORTHO05D001028 1.7e-20 102.8 115 50.4
Peaxi162Scf00362g10019 Petunia axillaris HOM05D001116 ORTHO05D001028 1.7e-20 102.8 116 52.6
QL06p053317 Quercus lobata HOM05D001116 ORTHO05D001028 2.3e-20 102.4 115 50.4
vmacro20610 Vaccinium macrocarpon HOM05D001116 ORTHO05D001028 2.3e-20 102.4 115 50.4
EL10Ac6g15032 Beta vulgaris HOM05D001116 ORTHO05D001028 3.0e-20 102.1 115 49.6
CARHR293660 Cardamine hirsuta HOM05D001116 ORTHO05D001028 3.0e-20 102.1 114 50.9
HanXRQChr15g0479831 Helianthus annuus HOM05D001116 ORTHO05D001028 3.0e-20 102.1 115 52.2
Lj2g0014449 Lotus japonicus HOM05D001116 ORTHO05D001028 3.0e-20 102.1 115 49.6
Lalb_Chr04g0246911 Lupinus albus HOM05D001116 ORTHO05D001028 3.0e-20 102.1 115 50.4
Actinidia17149 Actinidia chinensis HOM05D001116 ORTHO05D001028 3.9e-20 101.7 115 50.4
Hma1.2p1_0032F.1_g018750 Hydrangea macrophylla HOM05D001116 ORTHO05D001028 3.9e-20 101.7 115 51.3
Lalb_Chr05g0214941 Lupinus albus HOM05D001116 ORTHO05D001028 3.9e-20 101.7 115 47.8
Medtr5g024770 Medicago truncatula HOM05D001116 ORTHO05D001028 3.9e-20 101.7 115 49.6
LjContig00081g0004922 Lotus japonicus HOM05D001116 ORTHO05D001028 5.1e-20 101.3 115 51.3
MBI06_g23365_MAGBIO Magnolia biondii HOM05D001116 ORTHO05D001028 6.6e-20 100.9 115 48.7
Nitab4.5_0004269g0030 Nicotiana tabacum HOM05D001116 ORTHO05D001028 6.6e-20 100.9 116 48.3
Medtr4g094578 Medicago truncatula HOM05D001116 ORTHO05D001028 8.7e-20 100.5 114 50.9
Ca_24995_v3 Cicer arietinum L. HOM05D001116 ORTHO05D001028 1.1e-19 100.1 115 49.6
Nitab4.5_0000495g0030 Nicotiana tabacum HOM05D001116 ORTHO05D001028 1.1e-19 100.1 116 48.3
Zm00001eb104460 Zea mays HOM05D001116 ORTHO05D001028 1.1e-19 100.1 115 46.1
Ah.03g142960 Amaranthus hybridus HOM05D001116 ORTHO05D001028 1.5e-19 99.8 115 49.6
arahy.Tifrunner.gnm1.ann1.3PTW71 Arachis hypogaea HOM05D001116 ORTHO05D001028 1.9e-19 99.4 115 49.6
arahy.Tifrunner.gnm1.ann1.KJS60N Arachis hypogaea HOM05D001116 ORTHO05D001028 1.9e-19 99.4 115 49.6
Lalb_Chr16g0380171 Lupinus albus HOM05D001116 ORTHO05D001028 1.9e-19 99.4 115 47.8
PGSC0003DMG400018680 Solanum tuberosum HOM05D001116 ORTHO05D001028 1.9e-19 99.4 115 48.7
GSVIVG01022311001 Vitis vinifera HOM05D001116 ORTHO05D001028 1.9e-19 99.4 115 48.7
AUR62003724 Chenopodium quinoa HOM05D001116 ORTHO05D001028 2.5e-19 99.0 115 47.8
Ca_11229_v3 Cicer arietinum L. HOM05D001116 ORTHO05D001028 2.5e-19 99.0 113 51.3
Glyma.01G157100 Glycine max HOM05D001116 ORTHO05D001028 2.5e-19 99.0 115 47.8
Glyma.11G087800 Glycine max HOM05D001116 ORTHO05D001028 2.5e-19 99.0 115 47.8
Nitab4.5_0000783g0040 Nicotiana tabacum HOM05D001116 ORTHO05D001028 2.5e-19 99.0 115 51.3
Phvul.002G118300 Phaseolus vulgaris HOM05D001116 ORTHO05D001028 2.5e-19 99.0 115 48.7
VMungo1215G0584 Vigna mungo HOM05D001116 ORTHO05D001028 2.5e-19 99.0 115 47.8
TPR.G33777 Trifolium pratense HOM05D001116 ORTHO05D001028 4.3e-19 98.2 115 47.0
Cc07_g12110 Coffea canephora HOM05D001116 ORTHO05D001028 5.6e-19 97.8 116 47.4
Migut.N01361 Erythranthe guttata HOM05D001116 ORTHO05D001028 5.6e-19 97.8 115 50.4
Potri.005G098800 Populus trichocarpa HOM05D001116 ORTHO05D001028 5.6e-19 97.8 115 47.8
CDE08G0407 Ceratophyllum demersum HOM05D001116 ORTHO05D001028 7.3e-19 97.4 115 46.1
Sopen03g005880 Solanum pennellii HOM05D001116 ORTHO05D001028 7.3e-19 97.4 115 48.7
Atru.chr3.49 Acer truncatum HOM05D001116 ORTHO05D001028 9.6e-19 97.1 115 47.0
Psat2g147680 Pisum sativum HOM05D001116 ORTHO05D001028 9.6e-19 97.1 115 46.1
Rhsim10G0191700 Rhododendron simsii HOM05D001116 ORTHO05D001028 9.6e-19 97.1 144 42.4
AUR62016575 Chenopodium quinoa HOM05D001116 ORTHO05D001028 1.3e-18 96.7 115 47.8
Haze_03638 Corylus avellana HOM05D001116 ORTHO05D001028 1.6e-18 96.3 115 46.1
Sabra05G0081200 Salix brachista HOM05D001116 ORTHO05D001028 2.8e-18 95.5 115 46.1
Cfa007108 Carpinus fangiana HOM05D001116 ORTHO05D001028 3.6e-18 95.1 115 45.2
Thecc.01G002500 Theobroma cacao HOM05D001116 ORTHO05D001028 3.6e-18 95.1 115 47.0
unitig_746.g26875 Utricularia gibba HOM05D001116 ORTHO05D001028 3.6e-18 95.1 115 49.6
CDE04G1485 Ceratophyllum demersum HOM05D001116 ORTHO05D001028 2.4e-17 92.4 115 42.6
PSO210G5186 Papaver somniferum HOM05D001116 ORTHO05D001028 2.4e-17 92.4 115 46.1
SalBow5G0145 Salvia bowleyana HOM05D001116 ORTHO05D001028 3.1e-17 92.0 115 47.0
SalBow5G0349 Salvia bowleyana HOM05D001116 ORTHO05D001028 3.1e-17 92.0 115 47.0
ECA238G0134 Erigeron canadensis HOM05D001116 ORTHO05D001028 4.0e-17 91.7 115 47.0
Aqoxy5G00971 Aquilegia oxysepala HOM05D001116 ORTHO05D001028 5.3e-17 91.3 115 45.2
CANSAT25G2574 Cannabis sativa HOM05D001116 ORTHO05D001028 5.3e-17 91.3 115 46.1
TWI09G0347 Tripterygium wilfordii HOM05D001116 ORTHO05D001028 1.2e-16 90.1 115 44.3
PSO170G4420 Papaver somniferum HOM05D001116 ORTHO05D001028 2.6e-16 89.0 115 44.3
HPP92_022182 Vanilla planifolia HOM05D001116 ORTHO05D021127 2.6e-16 89.0 115 43.5
HPP92_022196 Vanilla planifolia HOM05D001116 ORTHO05D001028 2.6e-16 89.0 115 43.5
HanXRQChr10g0316211 Helianthus annuus HOM05D001116 ORTHO05D001028 3.4e-16 88.6 115 45.2
BolC7t41015H Brassica oleracea HOM05D001116 ORTHO05D001028 2.9e-15 85.5 114 44.7
BcaC06g36250 Brassica carinata HOM05D001116 ORTHO05D001028 3.8e-15 85.1 114 44.7
SEGI_29927 Sequoiadendron giganteum HOM05D001116 ORTHO05D001028 6.4e-15 84.3 115 42.6
C07p06020 Brassica napus HOM05D001116 ORTHO05D001028 8.4e-15 84.0 114 43.9
SMO230G0061 Selaginella moellendorffii HOM05D001116 ORTHO05D001028 1.2e-13 80.1 116 45.7
Pp3c8_21830 Physcomitrium patens HOM05D001116 ORTHO05D001028 1.8e-12 76.3 115 39.1
Lj5C171G24 Lonicera japonica HOM05D001116 ORTHO05D001028 3.0e-12 75.5 74 56.8
Pp3c13_9800 Physcomitrium patens HOM05D001116 ORTHO05D001028 3.9e-12 75.1 115 41.7
AagrBONN_evm.TU.Sc2ySwM_362.2071 Anthoceros agrestis HOM05D001116 ORTHO05D001028 5.1e-12 74.7 115 40.0
BraA07t28163Z Brassica rapa HOM05D001116 ORTHO05D001028 1.9e-11 72.8 98 44.9
Lj2C504G4 Lonicera japonica HOM05D001116 ORTHO05D001028 7.4e-11 70.9 76 52.6
Mapoly0136s0026 Marchantia polymorpha HOM05D001116 ORTHO05D001028 7.4e-11 70.9 115 37.4
THA.LOC104804298 Tarenaya hassleriana HOM05D001116 ORTHO05D001028 3.4e-08 62.0 73 46.6
Actinidia40398 Actinidia chinensis HOM05D001116 ORTHO05D054676 1.7e-07 59.7 71 47.9


User provided reference genes

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