Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 0.0e+00 1193.3 627 100.0
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.3e-210 736.9 616 65.9
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 3.8e-210 735.3 611 64.5
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.0e-207 727.2 610 65.2
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-206 723.8 610 63.4
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.5e-206 723.4 616 62.5
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 3.3e-206 722.2 599 64.1
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.7e-205 719.9 613 62.8
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.8e-205 718.4 616 63.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.1e-204 717.2 623 62.6
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.2e-203 713.8 609 64.9
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 5.9e-203 711.4 609 63.2
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.3e-202 710.3 607 63.8
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.2e-199 698.4 620 61.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 5.2e-199 698.4 614 61.9
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 6.8e-199 698.0 611 62.7
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.5e-198 696.8 611 62.0
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.0e-198 696.4 636 60.4
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 2.0e-198 696.4 612 61.8
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.1e-196 690.6 610 61.5
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 2.7e-195 686.0 614 61.6
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.5e-195 685.3 616 61.4
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.7e-194 683.3 616 61.7
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 3.8e-194 682.2 609 61.4
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 6.5e-194 681.4 609 60.8
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.9e-193 679.9 610 61.5
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 3.2e-193 679.1 607 62.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 5.5e-193 678.3 582 64.1
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 7.2e-193 677.9 581 64.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 2.1e-192 676.4 618 60.7
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.8e-191 673.3 610 61.1
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 1.8e-191 673.3 618 60.8
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.0e-191 672.5 610 61.1
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 4.0e-191 672.2 592 61.7
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 3.4e-190 669.1 624 60.6
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 9.8e-190 667.5 617 61.8
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 4.9e-189 665.2 645 58.8
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 9.1e-188 661.0 597 60.6
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 7.7e-187 657.9 596 59.4
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 7.7e-187 657.9 599 60.1
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.9e-186 656.0 618 59.1
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 5.0e-186 655.2 611 60.4
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.1e-185 654.1 575 62.8
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 7.2e-185 651.4 612 58.8
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.5e-185 651.0 575 63.0
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.2e-184 650.6 582 61.7
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 4.7e-184 648.7 581 60.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 4.0e-183 645.6 592 59.6
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 5.2e-183 645.2 584 60.6
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 6.8e-183 644.8 598 57.4
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.2e-182 644.0 593 59.5
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.7e-182 641.7 644 56.4
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 5.7e-182 641.7 610 58.5
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 7.5e-182 641.3 604 59.1
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 9.8e-182 641.0 623 59.1
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.2e-181 639.8 576 60.2
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-180 636.0 593 58.2
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.1e-180 635.6 612 57.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 9.2e-180 634.4 597 58.0
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 9.2e-180 634.4 607 57.2
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.6e-179 633.6 576 60.1
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.0e-179 633.3 576 60.8
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.7e-179 632.9 590 60.0
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 3.5e-179 632.5 584 57.5
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 5.9e-179 631.7 593 58.7
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 5.9e-179 631.7 594 57.9
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 7.8e-179 631.3 571 60.2
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 5.0e-178 628.6 585 58.6
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.9e-177 626.7 603 57.0
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 5.6e-177 625.2 596 57.6
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.6e-176 623.6 600 57.3
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.6e-176 623.6 609 57.8
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 4.7e-176 622.1 606 59.1
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 4.7e-176 622.1 606 57.9
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.3e-175 619.8 642 55.0
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 3.1e-175 619.4 610 56.4
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 3.1e-175 619.4 610 56.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 9.8e-174 614.4 596 57.6
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.3e-173 614.0 613 55.6
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.3e-173 614.0 615 57.1
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.7e-173 613.6 607 56.0
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.1e-172 610.9 616 55.2
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.4e-172 610.5 597 56.1
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.1e-172 609.0 598 56.5
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 6.0e-171 605.1 578 56.7
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.0e-170 604.4 586 56.5
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 2.3e-170 603.2 634 56.0
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.5e-169 599.7 579 58.5
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.1e-168 596.7 636 54.6
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-167 594.3 506 61.3
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.1e-167 594.3 591 56.0
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.8e-167 593.6 610 58.0
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 8.6e-162 574.7 621 55.1
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.1e-160 570.1 620 53.4
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.1e-160 570.1 623 52.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.4e-159 567.4 619 52.7
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.3e-159 566.6 576 53.8
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 2.3e-159 566.6 607 51.7
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 8.9e-159 564.7 608 54.1
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 9.9e-158 561.2 598 53.3
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 5.1e-154 548.9 626 51.9
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 9.6e-153 544.7 603 54.1
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-151 541.2 588 52.9
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.0e-150 537.0 557 54.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.1e-148 531.2 496 60.5
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.1e-147 526.9 586 52.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 4.6e-139 499.2 617 51.1
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.5e-134 484.2 461 57.7
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 7.9e-131 471.9 506 55.1
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 3.9e-130 469.5 579 47.2
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.3e-125 454.5 582 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.3e-122 443.7 631 44.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.1e-119 434.9 645 42.8
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.1e-97 361.7 384 56.2
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 9.1e-95 352.1 378 54.2
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 5.9e-94 349.4 407 50.9
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 5.2e-90 336.3 259 66.4
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.3e-89 333.6 537 39.9
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.7e-75 287.3 350 48.6
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 3.0e-74 283.9 384 45.1
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.6e-73 280.8 277 54.2
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 2.0e-70 271.2 360 47.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.6e-59 235.0 312 41.7
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 4.7e-59 233.4 502 34.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 6.6e-53 213.0 119 87.4
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 6.4e-48 196.4 220 51.8
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.2e-46 192.2 193 57.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.1e-46 191.4 213 52.1
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.1e-46 191.4 115 80.0
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 3.0e-45 187.6 223 43.0
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.0e-41 174.9 237 44.3
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.4e-39 168.7 157 59.2
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.4e-39 167.9 555 27.0
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 8.6e-37 159.5 101 75.2
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.6e-36 156.8 167 53.3
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 7.3e-36 156.4 126 66.7
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 5.2e-34 150.2 191 45.5
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 8.4e-32 142.9 142 52.8
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.1e-31 142.5 138 54.3
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 7.1e-31 139.8 146 53.4
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.5e-30 137.5 268 34.7
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.3e-29 135.6 185 47.6
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.3e-29 135.6 147 53.1
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.8e-26 125.2 87 72.4
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 5.3e-26 123.6 87 71.3
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.5e-25 122.1 124 63.7
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 7.6e-25 119.8 118 60.2
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 2.9e-24 117.9 65 84.6
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 5.4e-23 113.6 107 53.3
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.3e-23 112.8 172 43.6
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 3.5e-22 110.9 104 52.9
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.5e-20 104.8 74 71.6
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 9.6e-20 102.8 70 68.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 7.6e-17 93.2 176 34.1
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.9e-15 88.6 69 65.2
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 2.3e-13 81.6 167 36.5
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 2.5e-12 78.2 49 75.5
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 7.4e-12 76.6 90 50.0
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.4e-10 72.4 74 55.4
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 2.4e-10 71.6 155 35.5
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 2.6e-09 68.2 67 58.2
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.4e-07 62.4 50 64.0
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 5.5e-07 60.5 59 55.9
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 7.1e-07 60.1 49 63.3
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.7e-06 58.2 120 35.0


User provided reference genes

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