Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 3.3e-50 201.4 105 100.0
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 9.4e-21 103.6 82 69.5
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.6e-20 102.8 109 56.0
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 2.1e-20 102.4 108 57.4
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 6.1e-20 100.9 83 63.9
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.0e-19 98.6 78 70.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.6e-18 95.5 97 58.8
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 5.7e-18 94.4 92 62.0
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.3e-17 93.2 81 66.7
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.7e-17 92.8 80 66.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.8e-17 92.0 97 57.7
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 3.7e-17 91.7 76 64.5
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 4.8e-17 91.3 110 52.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.8e-17 91.3 81 65.4
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.8e-17 91.3 81 65.4
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.8e-17 91.3 90 57.8
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 6.3e-17 90.9 81 64.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 6.3e-17 90.9 92 62.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.3e-17 90.5 89 57.3
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 8.3e-17 90.5 76 63.2
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.3e-17 90.5 98 55.1
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.4e-16 89.7 80 63.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.8e-16 89.4 108 51.9
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.8e-16 89.4 87 57.5
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 3.1e-16 88.6 112 52.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-16 88.6 112 52.7
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-16 88.6 112 52.7
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-16 88.6 112 52.7
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 3.1e-16 88.6 86 57.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 3.1e-16 88.6 83 63.9
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.1e-16 88.2 87 59.8
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-16 88.2 111 53.2
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.1e-16 88.2 80 62.5
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.1e-16 88.2 83 57.8
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.1e-16 88.2 83 57.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.4e-16 87.8 102 53.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 5.4e-16 87.8 80 63.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.0e-16 87.4 87 59.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 7.0e-16 87.4 72 66.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 7.0e-16 87.4 108 49.1
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.0e-16 87.4 81 61.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 7.0e-16 87.4 81 61.7
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.6e-15 86.3 103 52.4
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.6e-15 86.3 94 55.3
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.0e-15 85.9 81 60.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.0e-15 85.9 93 55.9
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 2.7e-15 85.5 111 49.5
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.5e-15 85.1 91 58.2
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.5e-15 84.7 78 61.5
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.0e-14 83.6 100 51.0
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-14 83.2 99 53.5
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.7e-14 82.8 81 59.3
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.2e-14 82.4 103 52.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 5.0e-14 81.3 107 51.4
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 6.5e-14 80.9 81 59.3
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.5e-14 80.9 68 66.2
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 6.5e-14 80.9 83 56.6
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.5e-13 79.0 73 63.0
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 3.2e-13 78.6 70 60.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.2e-13 78.6 102 50.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.2e-13 78.6 75 58.7
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 5.5e-13 77.8 109 47.7
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.5e-13 77.8 109 47.7
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 5.5e-13 77.8 73 61.6
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.2e-13 77.4 105 50.5
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.5e-13 77.0 88 54.5
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.2e-12 76.6 88 54.5
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.6e-12 76.3 65 63.1
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 2.1e-12 75.9 76 57.9
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.7e-12 75.5 67 62.7
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.7e-12 75.5 102 51.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 2.7e-12 75.5 75 56.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 3.6e-12 75.1 72 61.1
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 8.0e-12 73.9 85 50.6
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.0e-11 73.6 96 49.0
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-11 73.6 76 52.6
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.8e-11 72.8 69 65.2
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.8e-11 72.8 93 50.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.3e-11 72.4 66 60.6
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 3.0e-11 72.0 75 57.3
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.0e-11 72.0 59 62.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.0e-11 72.0 62 64.5
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.0e-11 72.0 62 64.5
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.0e-11 71.6 77 54.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 5.2e-11 71.2 69 63.8
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 5.2e-11 71.2 103 49.5
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 8.8e-11 70.5 72 54.2
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 8.8e-11 70.5 69 56.5
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.0e-10 69.3 95 49.5
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.6e-10 68.9 70 55.7
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.6e-10 68.9 59 61.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 3.4e-10 68.6 84 58.3
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.4e-10 68.6 58 67.2
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.4e-10 68.6 90 50.0
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 4.4e-10 68.2 70 60.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.4e-10 68.2 49 71.4
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.4e-10 68.2 72 56.9
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.4e-10 68.2 75 50.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.7e-10 67.8 76 48.7
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.5e-10 67.4 72 56.9
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.8e-10 67.0 62 64.5
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 9.8e-10 67.0 63 55.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 9.8e-10 67.0 70 54.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.8e-10 67.0 74 51.4
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.3e-09 66.6 102 46.1
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.7e-09 66.2 66 54.5
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.7e-09 66.2 83 49.4
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.2e-09 65.9 76 46.1
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 2.2e-09 65.9 64 54.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.8e-09 65.5 47 72.3
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.8e-09 65.5 95 45.3
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.9e-09 64.7 59 61.0
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.9e-09 64.7 84 48.8
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.9e-09 64.7 62 59.7
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.4e-08 63.2 60 55.0
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 2.4e-08 62.4 72 54.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.4e-08 62.4 64 51.6
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.4e-08 62.4 98 41.8
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.4e-08 62.4 70 48.6
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.1e-08 62.0 62 50.0
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 3.1e-08 62.0 60 51.7
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.1e-08 61.6 71 50.7
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 5.4e-08 61.2 59 52.5
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 7.0e-08 60.8 61 50.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 9.2e-08 60.5 60 51.7
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 9.2e-08 60.5 60 51.7
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.2e-07 60.1 60 51.7
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.2e-07 60.1 67 49.3
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.7e-07 58.9 64 46.9
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.7e-07 58.9 93 40.9
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 4.5e-07 58.2 97 41.2
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.0e-06 57.0 74 45.9
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.3e-06 56.6 52 57.7
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-06 56.6 59 52.5
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.3e-06 56.6 65 50.8
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.7e-06 56.2 69 47.8
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.7e-06 56.2 60 51.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.3e-06 55.8 59 50.8
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.3e-06 55.8 42 69.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.9e-06 55.5 68 47.1
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.9e-06 55.5 53 54.7
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.8e-06 55.1 59 47.5
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 5.0e-06 54.7 75 46.7
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 6.6e-06 54.3 93 38.7
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 8.6e-06 53.9 75 46.7


User provided reference genes

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