Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g10690 Coffea canephora HOM05D007618 ORTHO05D009606 2.7e-94 348.6 170 100.0
Dinv14162 Davidia involucrata HOM05D007618 ORTHO05D009606 3.2e-79 298.5 170 82.9
Ciclev10029401m.g Citrus clementina HOM05D007618 ORTHO05D009606 2.1e-78 295.8 170 82.4
CsaV3_6G010180 Cucumis sativus L. HOM05D007618 ORTHO05D009606 2.7e-78 295.4 170 80.6
PGR142G1310 Punica granatum HOM05D007618 ORTHO05D009606 2.7e-78 295.4 170 80.6
Potri.009G165700 Populus trichocarpa HOM05D007618 ORTHO05D009606 3.6e-78 295.0 170 81.2
GSVIVG01023981001 Vitis vinifera HOM05D007618 ORTHO05D009606 1.0e-77 293.5 170 81.2
Potri.004G204700 Populus trichocarpa HOM05D007618 ORTHO05D009606 1.4e-77 293.1 170 80.6
MELO3C013504.2 Cucumis melo HOM05D007618 ORTHO05D009606 4.0e-77 291.6 170 80.0
TAR628G0843 Trochodendron aralioides HOM05D007618 ORTHO05D009606 5.2e-77 291.2 170 79.4
CiPaw.05G091300 Carya illinoinensis HOM05D007618 ORTHO05D009606 8.8e-77 290.4 170 80.0
TAR376G0137 Trochodendron aralioides HOM05D007618 ORTHO05D009606 2.6e-76 288.9 170 78.2
HanXRQChr14g0459071 Helianthus annuus HOM05D007618 ORTHO05D009606 3.3e-76 288.5 170 78.2
MSTRG.19948 Avicennia marina HOM05D007618 ORTHO05D009606 4.4e-76 288.1 170 79.4
Sed0023624 Sechium edule HOM05D007618 ORTHO05D009606 4.4e-76 288.1 170 80.0
Prupe.8G177800 Prunus persica HOM05D007618 ORTHO05D009606 5.7e-76 287.7 170 80.0
Eucgr.I01514 Eucalyptus grandis HOM05D007618 ORTHO05D009606 7.5e-76 287.3 170 78.2
Manes.04G067600 Manihot esculenta HOM05D007618 ORTHO05D009606 9.7e-76 287.0 170 78.2
Solyc01g112170.3 Solanum lycopersicum HOM05D007618 ORTHO05D009606 1.3e-75 286.6 170 77.6
Sopen01g054220 Solanum pennellii HOM05D007618 ORTHO05D009606 1.3e-75 286.6 170 77.6
FvH4_2g16570 Fragaria vesca HOM05D007618 ORTHO05D009606 2.2e-75 285.8 170 79.4
Nn6g31724 Nelumbo nucifera HOM05D007618 ORTHO05D009606 2.8e-75 285.4 170 77.6
Migut.B00014 Erythranthe guttata HOM05D007618 ORTHO05D009606 3.7e-75 285.0 170 78.2
RcHm_v2.0_Chr6g0280641 Rosa chinensis HOM05D007618 ORTHO05D009606 6.3e-75 284.3 170 78.8
Lj1g0004638 Lotus japonicus HOM05D007618 ORTHO05D009606 8.2e-75 283.9 170 78.8
QL11p055874 Quercus lobata HOM05D007618 ORTHO05D009606 3.1e-74 282.0 164 79.9
Sabra04G0138200 Salix brachista HOM05D007618 ORTHO05D009606 3.1e-74 282.0 170 77.6
Phvul.009G116000 Phaseolus vulgaris HOM05D007618 ORTHO05D009606 4.1e-74 281.6 170 76.5
Sabra09G0129500 Salix brachista HOM05D007618 ORTHO05D009606 4.1e-74 281.6 164 79.3
Glyma.06G000700 Glycine max HOM05D007618 ORTHO05D009606 7.0e-74 280.8 169 76.3
Hund06167 Selenicereus undatus HOM05D007618 ORTHO05D009606 9.1e-74 280.4 170 75.9
ClCG02G010360 Citrullus lanatus HOM05D007618 ORTHO05D009606 1.6e-73 279.6 164 78.7
MD10G1139000 Malus domestica HOM05D007618 ORTHO05D009606 2.0e-73 279.3 170 77.6
CANSAT64G2827 Cannabis sativa HOM05D007618 ORTHO05D009606 5.9e-73 277.7 163 79.1
Hma1.2p1_0271F.1_g108950 Hydrangea macrophylla HOM05D007618 ORTHO05D009606 1.3e-72 276.6 164 77.4
SalBow1G1919 Salvia bowleyana HOM05D007618 ORTHO05D009606 1.3e-72 276.6 167 76.6
Gohir.D10G000400 Gossypium hirsutum HOM05D007618 ORTHO05D009606 1.7e-72 276.2 170 75.3
Thecc.06G045200 Theobroma cacao HOM05D007618 ORTHO05D009606 2.2e-72 275.8 170 75.3
Lalb_Chr08g0246841 Lupinus albus HOM05D007618 ORTHO05D009606 6.5e-72 274.2 166 76.5
PSO541G4833 Papaver somniferum HOM05D007618 ORTHO05D009606 6.5e-72 274.2 170 76.5
FAN15G3577 Fragaria x ananassa HOM05D007618 ORTHO05D009606 5.5e-71 271.2 163 77.9
Nitab4.5_0000783g0170 Nicotiana tabacum HOM05D007618 ORTHO05D009606 2.1e-70 269.2 163 77.3
SGA_v2.0_scaffold32G13341 Striga asiatica HOM05D007618 ORTHO05D009606 2.1e-70 269.2 163 76.7
FAN27G0591 Fragaria x ananassa HOM05D007618 ORTHO05D009606 4.7e-70 268.1 164 76.8
HPP92_022157 Vanilla planifolia HOM05D007618 ORTHO05D009606 4.7e-70 268.1 171 74.3
COL.COLO4_26755 Corchorus olitorius HOM05D007618 ORTHO05D009606 6.1e-70 267.7 163 76.7
Gorai.011G000800 Gossypium raimondii HOM05D002478 ORTHO05D003331 1.4e-69 266.5 164 75.0
PSO675G2292 Papaver somniferum HOM05D007618 ORTHO05D009606 2.3e-69 265.8 170 75.3
MBI08_g32524_MAGBIO Magnolia biondii HOM05D007618 ORTHO05D009606 3.0e-69 265.4 175 74.3
arahy.Tifrunner.gnm1.ann1.I7PWT1 Arachis hypogaea HOM05D007618 ORTHO05D009606 4.4e-68 261.5 160 74.4
EL10Ac9g21249 Beta vulgaris HOM05D007618 ORTHO05D009606 2.2e-67 259.2 160 75.0
Gohir.A10G000200 Gossypium hirsutum HOM05D002478 ORTHO05D003331 2.4e-66 255.8 185 67.0
Cfa005346 Carpinus fangiana HOM05D007618 ORTHO05D009606 3.1e-66 255.4 152 78.9
AUR62011704 Chenopodium quinoa HOM05D007618 ORTHO05D009606 4.1e-66 255.0 169 71.0
Lsat_1_v5_gn_8_120421 Lactuca sativa HOM05D007618 ORTHO05D009606 4.1e-66 255.0 155 76.8
CDE05G0820 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 3.5e-65 251.9 170 70.6
Peaxi162Scf00362g00251 Petunia axillaris HOM05D007618 ORTHO05D009606 4.5e-65 251.5 167 71.9
arahy.Tifrunner.gnm1.ann1.ZSY7EJ Arachis hypogaea HOM05D007618 ORTHO05D009606 8.5e-64 247.3 162 72.2
Nitab4.5_0011212g0030 Nicotiana tabacum HOM05D007618 ORTHO05D009606 2.5e-63 245.7 153 75.8
vmacro02327 Vaccinium macrocarpon HOM05D007618 ORTHO05D009606 1.2e-62 243.4 219 58.9
Sc18g0005980 Simmondsia chinensis HOM05D007618 ORTHO05D009606 1.0e-61 240.4 152 75.0
Duzib235G1428 Durio zibethinus HOM05D007618 ORTHO05D009606 1.8e-61 239.6 172 67.4
QL11p055571 Quercus lobata HOM05D007618 ORTHO05D009606 2.3e-61 239.2 139 80.6
Actinidia20565 Actinidia chinensis HOM05D007618 ORTHO05D009606 9.8e-60 233.8 169 67.5
VMungo1309G2136 Vigna mungo HOM05D007618 ORTHO05D009606 6.3e-59 231.1 139 77.0
DCAR_022841 Daucus carota HOM05D007618 ORTHO05D009606 9.2e-58 227.3 164 67.7
arahy.Tifrunner.gnm1.ann1.U2J3P2 Arachis hypogaea HOM05D007618 ORTHO05D009606 2.1e-54 216.1 134 74.6
Zm00001eb002550 Zea mays HOM05D007618 ORTHO05D009606 1.2e-52 210.3 139 69.8
Mapoly0032s0019 Marchantia polymorpha HOM05D007618 ORTHO05D009606 6.4e-51 204.5 170 56.5
Glyma.04G001200 Glycine max HOM05D007618 ORTHO05D009606 1.4e-50 203.4 125 76.0
Rhsim11G0196900 Rhododendron simsii HOM05D007618 ORTHO05D009606 1.8e-50 203.0 114 82.5
ECA233G1377 Erigeron canadensis HOM05D007618 ORTHO05D009606 3.9e-48 195.3 113 79.6
arahy.Tifrunner.gnm1.ann1.DQ7S7B Arachis hypogaea HOM05D007618 ORTHO05D009606 9.5e-47 190.7 116 75.9
Pp3c3_10700 Physcomitrium patens HOM05D007618 ORTHO05D009606 1.6e-46 189.9 164 52.4
SEGI_37348 Sequoiadendron giganteum HOM05D007618 ORTHO05D009606 7.0e-42 174.5 164 54.9
Nn1g00573 Nelumbo nucifera HOM05D007618 ORTHO05D009606 2.1e-38 162.9 138 60.1
Atru.chr5.3531 Acer truncatum HOM05D007618 ORTHO05D009606 3.6e-38 162.2 96 81.2
TPR.G29338 Trifolium pratense HOM05D007618 ORTHO05D009606 7.5e-36 154.5 98 74.5
SMO367G1105 Selaginella moellendorffii HOM05D007618 ORTHO05D009606 7.8e-33 144.4 170 45.3
CBR_g37948 Chara braunii HOM05D007618 ORTHO05D009606 2.8e-30 136.0 159 39.0
TPR.G38509 Trifolium pratense HOM05D007618 ORTHO05D009606 1.8e-29 133.3 75 80.0
Psat5g000560 Pisum sativum HOM05D007618 ORTHO05D009606 3.1e-29 132.5 75 80.0
CBR_g30676 Chara braunii HOM05D007618 ORTHO05D009606 4.0e-29 132.1 159 37.1
Cre03.g200050 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 5.4e-26 121.7 164 36.0
Actinidia18005 Actinidia chinensis HOM05D007618 ORTHO05D009606 2.7e-25 119.4 94 60.6
Cre12.g506850 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 3.0e-24 115.9 164 38.4
Cre03.g200000 Chlamydomonas reinhardtii HOM05D007618 ORTHO05D009606 9.6e-23 110.9 160 34.4
Psat5g000680 Pisum sativum HOM05D007618 ORTHO05D009606 1.2e-22 110.5 107 55.1
PGSC0003DMG401014675 Solanum tuberosum HOM05D007618 ORTHO05D009606 1.2e-22 110.5 116 51.7
arahy.Tifrunner.gnm1.ann1.0TM8HZ Arachis hypogaea HOM05D007618 ORTHO05D009606 1.6e-22 110.2 64 76.6
Atru.chr5.3316 Acer truncatum HOM05D000282 ORTHO05D000272 8.1e-22 107.8 63 77.8
MCO11G779 Micromonas commoda HOM05D007618 ORTHO05D009606 1.5e-20 103.6 166 33.7
Atru.chr8.2195 Acer truncatum HOM05D000282 ORTHO05D009606 2.0e-20 103.2 60 78.3
CDE05G1760 Ceratophyllum demersum HOM05D007618 ORTHO05D009606 3.4e-20 102.4 62 75.8
ECA233G4785 Erigeron canadensis HOM05D007618 ORTHO05D009606 3.2e-18 95.9 60 75.0
Atru.chr9.1689 Acer truncatum HOM05D000282 ORTHO05D009606 6.0e-17 91.7 56 75.0
Oeu006123.1 Olea europaea HOM05D007618 ORTHO05D009606 1.7e-16 90.1 52 78.8
FAN24G0716 Fragaria x ananassa HOM05D007618 ORTHO05D009606 2.3e-16 89.7 52 76.9
Nn5g30826 Nelumbo nucifera HOM05D007618 ORTHO05D009606 3.0e-16 89.4 59 69.5
Cc03_g12640 Coffea canephora HOM05D007618 ORTHO05D009606 3.9e-16 89.0 71 69.0
Atru.chr4.2937 Acer truncatum HOM05D000282 ORTHO05D000272 5.3e-13 78.6 48 72.9
MSTRG.19328 Avicennia marina HOM05D000059 ORTHO05D000128 6.7e-08 61.6 137 25.5
PGR004G2564 Punica granatum HOM05D000059 ORTHO05D000128 8.7e-08 61.2 137 27.7
BcaB01g01829 Brassica carinata HOM05D000059 ORTHO05D000128 3.3e-07 59.3 135 26.7
Lj2A421G41 Lonicera japonica HOM05D000059 ORTHO05D000128 3.3e-07 59.3 137 26.3
Atru.chr5.2713 Acer truncatum HOM05D000282 ORTHO05D000272 4.3e-07 58.9 60 50.0
DCAR_013454 Daucus carota HOM05D000059 ORTHO05D000128 4.3e-07 58.9 137 25.5
BcaB04g19857 Brassica carinata HOM05D000059 ORTHO05D000128 1.6e-06 57.0 137 26.3
EL10Ac1g02091 Beta vulgaris HOM05D000059 ORTHO05D000128 2.1e-06 56.6 132 22.0
BcaB01g00471 Brassica carinata HOM05D000059 ORTHO05D000528 2.1e-06 56.6 132 25.0
A09p44990 Brassica napus HOM05D000059 ORTHO05D000528 2.1e-06 56.6 132 25.0
C08p27090 Brassica napus HOM05D000059 ORTHO05D000528 2.1e-06 56.6 132 25.0
BolC8t50323H Brassica oleracea HOM05D000059 ORTHO05D000528 2.1e-06 56.6 132 25.0
BraA09t39959Z Brassica rapa HOM05D000059 ORTHO05D000528 2.1e-06 56.6 132 25.0
Cc06_g06880 Coffea canephora HOM05D000059 ORTHO05D000128 2.1e-06 56.6 137 24.8
C07p46630 Brassica napus HOM05D000059 ORTHO05D000528 2.8e-06 56.2 132 25.0
BolC7t45178H Brassica oleracea HOM05D000059 ORTHO05D000528 2.8e-06 56.2 132 25.0
HPP92_001751 Vanilla planifolia HOM05D000059 ORTHO05D000128 2.8e-06 56.2 136 26.5
BcaC02g09299 Brassica carinata HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
BcaC06g33354 Brassica carinata HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
A03p48530 Brassica napus HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
A04p07470 Brassica napus HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
C04p41130 Brassica napus HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
BolC4t25695H Brassica oleracea HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
BraA03t13958Z Brassica rapa HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
BraA04t16442Z Brassica rapa HOM05D000059 ORTHO05D000528 3.7e-06 55.8 132 25.0
Pp3c20_4100 Physcomitrium patens HOM05D000059 ORTHO05D000128 3.7e-06 55.8 137 25.5
Ah.02g118250 Amaranthus hybridus HOM05D000059 ORTHO05D000128 4.8e-06 55.5 137 25.5
BcaC06g33010 Brassica carinata HOM05D000059 ORTHO05D000528 4.8e-06 55.5 132 25.0
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 4.8e-06 55.5 159 25.2
Sp5g10420 Schrenkiella parvula HOM05D000059 ORTHO05D000528 4.8e-06 55.5 137 24.8
Pp3c20_4170 Physcomitrium patens HOM05D000059 ORTHO05D000128 6.2e-06 55.1 137 25.5
Pp3c23_18880 Physcomitrium patens HOM05D000059 ORTHO05D000128 6.2e-06 55.1 137 25.5
Pp3c23_18930 Physcomitrium patens HOM05D000059 ORTHO05D000128 6.2e-06 55.1 137 25.5
BcaB01g00411 Brassica carinata HOM05D000059 ORTHO05D000528 8.1e-06 54.7 132 24.2


User provided reference genes

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