Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 2.2e-60 235.3 113 100.0
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 2.9e-44 181.8 105 79.0
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 3.2e-43 178.3 108 75.9
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 4.2e-43 177.9 105 76.2
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 4.2e-43 177.9 105 75.2
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 4.2e-43 177.9 108 75.0
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 5.5e-43 177.6 108 74.1
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 5.5e-43 177.6 108 75.0
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 7.2e-43 177.2 108 73.1
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 9.4e-43 176.8 108 74.1
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 1.6e-42 176.0 108 74.1
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.6e-42 176.0 108 74.1
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.6e-42 176.0 105 76.2
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.1e-42 175.6 108 76.9
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.7e-42 175.3 108 75.0
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.7e-42 175.3 108 73.1
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 3.6e-42 174.9 108 73.1
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 3.6e-42 174.9 108 73.1
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 6.1e-42 174.1 105 75.2
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 8.0e-42 173.7 108 72.2
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 8.0e-42 173.7 108 72.2
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.8e-41 172.6 105 73.3
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.8e-41 172.6 108 72.2
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 2.3e-41 172.2 105 74.3
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 2.3e-41 172.2 108 70.4
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 5.2e-41 171.0 108 70.4
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 6.8e-41 170.6 107 72.9
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 6.8e-41 170.6 111 73.0
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 8.8e-41 170.2 107 72.0
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.2e-40 169.9 105 73.3
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.5e-40 169.5 107 72.0
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 2.0e-40 169.1 108 71.3
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 3.4e-40 168.3 105 73.3
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 3.4e-40 168.3 108 68.5
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.7e-40 167.5 105 74.3
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 7.5e-40 167.2 105 73.3
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 7.5e-40 167.2 108 73.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 7.5e-40 167.2 105 71.4
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 7.5e-40 167.2 108 69.4
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 9.8e-40 166.8 105 71.4
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 1.3e-39 166.4 104 74.0
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.7e-39 166.0 107 68.2
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 2.2e-39 165.6 105 73.3
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 2.2e-39 165.6 108 70.4
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 2.2e-39 165.6 108 71.3
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.8e-39 165.2 107 70.1
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 3.7e-39 164.9 106 72.6
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 4.8e-39 164.5 102 72.5
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 4.8e-39 164.5 102 71.6
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 8.3e-39 163.7 109 70.6
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 8.3e-39 163.7 107 67.3
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 1.1e-38 163.3 107 69.2
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-38 162.9 105 68.6
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 1.4e-38 162.9 116 69.0
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 1.4e-38 162.9 109 69.7
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.8e-38 162.5 105 73.3
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 2.4e-38 162.2 107 68.2
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 2.4e-38 162.2 107 68.2
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 2.4e-38 162.2 108 69.4
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 3.1e-38 161.8 118 66.1
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.1e-38 161.8 107 66.4
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 3.1e-38 161.8 107 70.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 4.1e-38 161.4 107 69.2
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 4.1e-38 161.4 105 71.4
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 5.4e-38 161.0 108 66.7
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 5.4e-38 161.0 108 69.4
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 7.0e-38 160.6 108 65.7
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 7.0e-38 160.6 87 83.9
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 9.1e-38 160.2 108 69.4
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 9.1e-38 160.2 107 67.3
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.2e-37 159.8 107 67.3
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 1.6e-37 159.5 101 72.3
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 2.0e-37 159.1 108 67.6
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 2.7e-37 158.7 102 70.6
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 7.7e-37 157.1 107 65.4
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 7.7e-37 157.1 108 66.7
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.0e-36 156.8 107 66.4
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 1.0e-36 156.8 105 68.6
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 1.3e-36 156.4 108 67.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.7e-36 156.0 107 65.4
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.7e-36 156.0 107 65.4
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 2.9e-36 155.2 107 65.4
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 3.8e-36 154.8 111 64.9
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 3.8e-36 154.8 108 65.7
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 3.8e-36 154.8 110 64.5
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 3.8e-36 154.8 100 71.0
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 1.5e-35 152.9 105 66.7
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 3.2e-35 151.8 108 63.9
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 1.6e-34 149.4 107 64.5
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 6.8e-33 144.1 107 61.7
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 7.5e-32 140.6 108 63.0
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 1.3e-31 139.8 108 59.3
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 2.8e-31 138.7 108 61.1
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 7.0e-30 134.0 107 60.7
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 4.5e-29 131.3 103 56.3
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 6.6e-28 127.5 126 52.4
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 8.6e-28 127.1 107 58.9
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.1e-27 126.7 126 52.4
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.9e-27 125.9 126 51.6
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 7.3e-27 124.0 105 54.3
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.7e-23 112.8 101 56.4
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 2.2e-23 112.5 106 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.9e-23 112.1 105 52.4
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 2.9e-23 112.1 105 52.4
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 2.7e-21 105.5 104 48.1
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 4.6e-21 104.8 110 52.7
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 1.7e-20 102.8 108 44.4
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 4.3e-19 98.2 68 63.2
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 7.3e-19 97.4 66 65.2
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 2.8e-18 95.5 60 70.0
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 5.2e-17 91.3 73 58.9
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.2e-16 90.1 82 54.9
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 4.4e-16 88.2 73 57.5
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 4.1e-14 81.6 70 55.7
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 3.0e-12 75.5 96 44.8
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 3.3e-11 72.0 48 66.7
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.5e-08 63.2 42 64.3


User provided reference genes

Program Settings