Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 4.9e-91 338.2 228 100.0
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 9.0e-77 290.8 224 80.8
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 4.5e-76 288.5 225 83.1
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 3.8e-75 285.4 224 79.0
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 3.2e-74 282.3 225 81.3
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 3.2e-74 282.3 225 79.6
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 5.5e-74 281.6 225 77.8
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 5.5e-74 281.6 224 67.9
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 7.2e-74 281.2 223 78.9
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.1e-73 279.6 224 77.2
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 2.1e-73 279.6 224 84.4
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 2.7e-73 279.3 225 71.1
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.6e-73 278.5 225 72.9
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 5.1e-72 275.0 225 72.0
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 5.1e-72 275.0 226 71.7
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.5e-71 273.5 224 78.1
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.0e-71 273.1 225 79.6
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 3.3e-71 272.3 225 84.4
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 2.8e-70 269.2 226 73.9
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 4.8e-70 268.5 225 70.2
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 4.8e-70 268.5 225 75.6
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 6.3e-70 268.1 225 75.6
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 8.2e-70 267.7 226 73.5
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.4e-69 266.9 223 70.0
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.4e-69 266.9 228 78.5
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.1e-69 265.8 224 78.6
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 4.1e-69 265.4 223 70.0
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 5.3e-69 265.0 223 82.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 1.5e-68 263.5 225 73.8
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.3e-67 260.4 225 74.2
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.2e-67 259.6 228 77.6
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.9e-67 259.2 225 73.8
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 5.0e-67 258.5 225 78.7
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.0e-67 258.5 222 77.0
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 8.5e-67 257.7 225 76.0
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 8.5e-67 257.7 228 79.8
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.1e-66 257.3 225 68.0
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 3.2e-66 255.8 224 67.0
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.2e-65 253.8 222 77.9
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.6e-65 253.4 225 80.4
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.7e-65 252.7 244 73.8
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.7e-65 252.7 225 72.0
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.7e-65 252.7 225 72.0
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 4.7e-65 251.9 225 74.2
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 6.1e-65 251.5 222 77.0
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 7.9e-65 251.1 225 76.9
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.4e-64 250.4 223 76.7
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.4e-64 250.4 225 70.2
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.8e-64 250.0 222 69.8
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 3.0e-64 249.2 223 79.4
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 3.9e-64 248.8 225 78.7
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 8.8e-64 247.7 241 72.2
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 2.0e-63 246.5 228 74.1
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 7.4e-63 244.6 224 75.9
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.7e-62 243.4 224 71.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.2e-62 243.0 225 64.9
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.8e-62 242.7 225 72.4
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 4.8e-62 241.9 226 66.4
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.1e-61 240.7 222 70.3
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.1e-61 240.7 225 76.4
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.4e-61 240.4 225 72.9
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.4e-61 240.4 225 65.3
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.8e-61 240.0 225 77.8
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 4.1e-61 238.8 226 74.3
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.3e-61 238.4 228 71.5
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.5e-60 235.3 228 76.8
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 5.9e-60 235.0 224 78.6
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 2.2e-59 233.0 223 65.5
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 6.5e-59 231.5 225 72.0
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 8.5e-59 231.1 254 66.1
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.5e-58 230.3 224 68.8
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 2.5e-58 229.6 225 75.1
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.2e-57 227.3 224 74.6
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 2.1e-57 226.5 224 71.9
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 8.0e-57 224.6 225 74.7
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 1.4e-56 223.8 225 70.2
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 8.8e-56 221.1 224 72.3
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.1e-55 220.7 230 61.7
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.3e-54 217.2 226 69.0
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.7e-54 216.9 225 60.9
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 4.1e-53 212.2 225 59.1
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 7.0e-53 211.5 223 53.4
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.6e-52 210.3 225 63.1
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 2.6e-52 209.5 225 67.1
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 1.7e-51 206.8 224 71.9
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.7e-51 206.8 232 64.2
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.2e-51 206.5 224 68.3
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.2e-51 206.5 223 73.1
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 2.9e-51 206.1 224 63.4
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 3.8e-51 205.7 224 65.2
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 6.5e-51 204.9 223 71.3
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 6.5e-51 204.9 226 51.8
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 8.5e-51 204.5 222 55.4
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 8.5e-51 204.5 327 52.3
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 8.5e-51 204.5 223 71.3
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.1e-50 204.1 225 57.3
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.4e-48 197.2 154 66.2
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 4.0e-48 195.7 223 53.8
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 4.4e-47 192.2 222 67.6
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 4.4e-47 192.2 222 67.6
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 4.4e-47 192.2 140 77.9
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 9.8e-47 191.0 225 68.0
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 8.3e-46 188.0 224 60.3
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.4e-45 187.2 222 67.1
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.4e-45 187.2 224 60.3
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 3.1e-45 186.0 222 66.7
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 4.1e-45 185.7 222 52.7
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 1.6e-44 183.7 222 64.9
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 2.0e-44 183.3 227 58.1
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.5e-44 182.6 222 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.0e-43 181.0 226 52.2
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 1.3e-43 180.6 222 63.1
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.3e-43 180.6 224 54.5
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.1e-42 177.6 226 55.8
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 4.7e-41 172.2 207 66.2
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 3.4e-39 166.0 184 68.5
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.1e-37 161.0 93 78.5
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.8e-29 133.7 222 45.9
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.4e-29 133.3 222 43.7
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.2e-29 132.9 65 92.3
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.5e-26 124.0 222 41.4
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 9.5e-26 121.3 71 80.3
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.0e-24 117.9 68 80.9
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.5e-23 114.0 90 62.2
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.3e-22 110.9 225 36.4
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 9.2e-21 104.8 232 35.3
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 4.4e-15 85.9 223 40.8
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.0e-11 73.2 159 35.2
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.9e-10 70.5 40 80.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 3.4e-07 59.7 78 42.3
Hma1.2p1_0076F.1_g039430 Hydrangea macrophylla HOM05D006255 ORTHO05D228104 5.8e-07 58.9 86 53.5
CDE09G1089 Ceratophyllum demersum HOM05D003023 ORTHO05D003412 1.3e-06 57.8 75 65.3
BcaC08g45812 Brassica carinata HOM05D000068 ORTHO05D004691 3.7e-06 56.2 42 73.8


User provided reference genes

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