Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.3e-68 263.1 151 100.0
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 1.0e-39 167.2 154 64.9
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.3e-39 166.8 156 64.1
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 1.4e-38 163.3 151 61.6
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 2.5e-38 162.5 149 61.1
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.2e-37 160.2 148 61.5
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.2e-37 160.2 158 60.8
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 1.2e-37 160.2 158 60.8
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 2.1e-37 159.5 149 61.1
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 7.9e-37 157.5 145 60.7
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.0e-36 157.1 154 61.0
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.8e-36 156.4 155 58.7
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 2.3e-36 156.0 149 60.4
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 3.0e-36 155.6 150 60.0
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 3.9e-36 155.2 153 61.4
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 3.9e-36 155.2 149 59.7
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 6.7e-36 154.5 150 62.7
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 8.7e-36 154.1 146 63.7
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 1.9e-35 152.9 157 57.3
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.5e-35 152.5 151 61.6
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 2.5e-35 152.5 151 59.6
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 3.3e-35 152.1 151 60.3
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.3e-35 152.1 151 60.3
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 5.7e-35 151.4 158 54.4
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 5.7e-35 151.4 152 58.6
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 5.7e-35 151.4 151 57.6
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 7.4e-35 151.0 150 58.0
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 9.7e-35 150.6 150 60.7
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 1.3e-34 150.2 152 59.2
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.3e-34 150.2 163 56.4
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 1.3e-34 150.2 158 58.2
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 1.6e-34 149.8 149 58.4
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 2.2e-34 149.4 152 55.9
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 2.2e-34 149.4 152 57.9
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 2.2e-34 149.4 154 57.8
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 2.8e-34 149.1 145 59.3
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.8e-34 149.1 145 57.2
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.8e-34 149.1 145 57.2
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 3.7e-34 148.7 151 57.0
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 3.7e-34 148.7 148 57.4
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 4.8e-34 148.3 151 59.6
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 4.8e-34 148.3 147 58.5
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 6.3e-34 147.9 151 55.6
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 8.2e-34 147.5 167 53.3
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 1.1e-33 147.1 147 60.5
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 1.1e-33 147.1 147 59.9
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.4e-33 146.7 145 59.3
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.4e-33 146.7 147 57.8
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.4e-33 146.7 162 53.7
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 2.4e-33 146.0 155 56.1
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 3.1e-33 145.6 151 55.0
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 4.1e-33 145.2 148 56.1
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 4.1e-33 145.2 149 56.4
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 5.3e-33 144.8 148 55.4
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 5.3e-33 144.8 145 59.3
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 9.1e-33 144.1 151 55.0
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 9.1e-33 144.1 145 56.6
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 9.1e-33 144.1 150 56.7
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 1.2e-32 143.7 147 57.8
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.0e-32 142.9 147 57.1
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.0e-32 142.9 160 52.5
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 2.0e-32 142.9 151 54.3
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.6e-32 142.5 138 58.7
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 2.6e-32 142.5 148 56.8
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 3.4e-32 142.1 151 56.3
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.4e-32 142.1 148 56.8
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 3.4e-32 142.1 151 52.3
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 3.4e-32 142.1 147 54.4
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 4.5e-32 141.7 151 54.3
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 5.9e-32 141.4 148 57.4
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 7.7e-32 141.0 153 54.9
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 7.7e-32 141.0 151 53.0
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.0e-31 140.6 152 53.3
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.0e-31 140.6 147 56.5
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 1.3e-31 140.2 152 53.3
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.3e-31 140.2 153 54.2
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.3e-31 140.2 153 54.2
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.3e-31 140.2 151 53.6
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.2e-31 139.4 137 58.4
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 2.2e-31 139.4 148 54.1
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.8e-31 138.7 137 57.7
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 8.5e-31 137.5 149 55.0
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 1.9e-30 136.3 144 59.7
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 3.2e-30 135.6 139 59.7
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 3.2e-30 135.6 148 54.7
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 4.2e-30 135.2 156 53.2
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 1.2e-29 133.7 158 53.8
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.2e-29 133.7 143 55.9
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 1.2e-29 133.7 146 52.1
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 2.1e-29 132.9 145 58.6
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 2.1e-29 132.9 152 57.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 2.7e-29 132.5 147 50.3
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 7.9e-29 131.0 158 50.0
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 7.9e-29 131.0 145 53.1
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.4e-28 130.2 145 51.0
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 6.7e-28 127.9 145 50.3
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.3e-27 125.6 146 54.1
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 1.3e-26 123.6 143 50.3
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 2.2e-26 122.9 145 49.0
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 2.2e-26 122.9 145 49.7
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.4e-25 120.2 151 51.0
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 1.8e-25 119.8 145 47.6
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 5.3e-25 118.2 147 53.1
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 9.1e-25 117.5 145 49.7
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 1.2e-24 117.1 144 49.3
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 1.0e-23 114.0 140 50.7
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 1.7e-23 113.2 142 47.2
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 1.7e-23 113.2 142 47.2
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 1.7e-23 113.2 142 47.2
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 1.7e-23 113.2 142 47.2
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 2.2e-23 112.8 142 45.8
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 2.9e-23 112.5 138 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 8.5e-23 110.9 144 47.9
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.0e-20 104.0 150 46.0
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.8e-20 103.2 129 51.9
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 6.3e-18 94.7 140 43.6
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 1.8e-17 93.2 123 48.8
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 5.3e-17 91.7 121 49.6
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 9.1e-17 90.9 135 43.0
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 3.5e-16 89.0 123 48.0
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 4.5e-16 88.6 147 39.5
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 2.9e-15 85.9 58 70.7
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 1.1e-14 84.0 145 42.1
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 3.0e-12 75.9 47 80.9
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 4.0e-12 75.5 47 78.7
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 8.2e-10 67.8 103 42.7
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 1.4e-09 67.0 145 33.8
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 5.9e-08 61.6 58 48.3
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 1.3e-07 60.5 43 74.4
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 8.5e-07 57.8 54 55.6


User provided reference genes

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