Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09690 Coffea canephora HOM05D003793 ORTHO05D004471 5.1e-60 234.2 116 100.0
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 6.5e-31 137.5 92 76.1
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 5.5e-14 81.3 92 48.9
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 9.4e-14 80.5 82 51.2
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 3.6e-13 78.6 79 53.2
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 3.6e-13 78.6 88 51.1
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 4.7e-13 78.2 84 52.4
Nitab4.5_0006250g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 4.7e-13 78.2 78 52.6
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 6.1e-13 77.8 88 48.9
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.0e-12 77.0 78 51.3
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 1.8e-12 76.3 76 51.3
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 3.0e-12 75.5 87 47.1
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 3.0e-12 75.5 80 50.0
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 3.0e-12 75.5 98 44.9
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 5.2e-12 74.7 85 50.6
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 6.8e-12 74.3 78 50.0
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 6.8e-12 74.3 76 48.7
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 6.8e-12 74.3 80 46.2
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 6.8e-12 74.3 80 46.2
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 6.8e-12 74.3 80 47.5
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 6.8e-12 74.3 87 47.1
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 8.8e-12 73.9 90 46.7
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 8.8e-12 73.9 76 50.0
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 8.8e-12 73.9 81 45.7
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 8.8e-12 73.9 80 48.8
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 8.8e-12 73.9 80 48.8
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 8.8e-12 73.9 80 47.5
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 8.8e-12 73.9 91 47.3
SalBow3G2197 Salvia bowleyana HOM05D003793 ORTHO05D004471 8.8e-12 73.9 78 48.7
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.2e-11 73.6 76 51.3
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.2e-11 73.6 84 50.0
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 1.2e-11 73.6 78 51.3
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.5e-11 73.2 85 51.8
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.5e-11 73.2 87 43.7
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 1.5e-11 73.2 77 50.6
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.0e-11 72.8 81 45.7
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 2.6e-11 72.4 80 48.8
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 2.6e-11 72.4 84 50.0
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 3.4e-11 72.0 90 46.7
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 4.4e-11 71.6 94 50.0
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 4.4e-11 71.6 72 50.0
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 4.4e-11 71.6 80 48.8
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 5.7e-11 71.2 81 48.1
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 7.5e-11 70.9 82 51.2
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 7.5e-11 70.9 77 49.4
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 7.5e-11 70.9 91 45.1
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 9.8e-11 70.5 84 50.0
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 1.3e-10 70.1 89 43.8
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 1.3e-10 70.1 80 45.0
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 1.3e-10 70.1 76 48.7
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 1.3e-10 70.1 82 48.8
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 1.3e-10 70.1 78 47.4
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 1.3e-10 70.1 78 46.2
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.7e-10 69.7 85 43.5
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.7e-10 69.7 85 43.5
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 1.7e-10 69.7 80 45.0
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 1.7e-10 69.7 110 42.7
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 1.7e-10 69.7 84 51.2
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 2.2e-10 69.3 94 46.8
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 2.2e-10 69.3 78 44.9
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 2.2e-10 69.3 91 45.1
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 2.2e-10 69.3 86 47.7
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.2e-10 69.3 86 47.7
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 4.8e-10 68.2 96 37.5
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 4.8e-10 68.2 77 46.8
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 4.8e-10 68.2 95 43.2
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 4.8e-10 68.2 81 48.1
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 6.3e-10 67.8 94 46.8
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 6.3e-10 67.8 96 43.8
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 6.3e-10 67.8 76 46.1
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.1e-09 67.0 92 41.3
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 1.1e-09 67.0 80 43.8
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 1.1e-09 67.0 81 50.6
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 1.8e-09 66.2 87 43.7
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 1.8e-09 66.2 83 41.0
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.8e-09 66.2 88 43.2
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 1.8e-09 66.2 87 46.0
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.4e-09 65.9 77 45.5
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 3.1e-09 65.5 84 44.0
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 4.1e-09 65.1 88 39.8
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 4.1e-09 65.1 82 47.6
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 7.0e-09 64.3 76 44.7
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 9.1e-09 63.9 84 42.9
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 9.1e-09 63.9 85 42.4
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 9.1e-09 63.9 78 47.4
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 1.2e-08 63.5 82 46.3
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 1.2e-08 63.5 81 42.0
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 1.2e-08 63.5 83 49.4
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 1.6e-08 63.2 79 45.6
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 2.0e-08 62.8 79 44.3
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 2.0e-08 62.8 82 46.3
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 2.0e-08 62.8 84 42.9
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 2.7e-08 62.4 89 42.7
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.7e-08 62.4 79 44.3
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 3.5e-08 62.0 87 42.5
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 3.5e-08 62.0 82 41.5
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 3.5e-08 62.0 89 39.3
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 3.5e-08 62.0 95 43.2
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 3.5e-08 62.0 80 43.8
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 4.5e-08 61.6 95 43.2
QL09p020572 Quercus lobata HOM05D003793 ORTHO05D004471 4.5e-08 61.6 78 46.2
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 4.5e-08 61.6 85 41.2
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 4.5e-08 61.6 87 46.0
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 5.9e-08 61.2 96 42.7
HPP92_027155 Vanilla planifolia HOM05D003793 ORTHO05D004471 5.9e-08 61.2 76 46.1
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 5.9e-08 61.2 76 46.1
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 5.9e-08 61.2 76 46.1
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 7.7e-08 60.8 81 44.4
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 7.7e-08 60.8 85 42.4
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.3e-07 60.1 85 43.5
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 3.8e-07 58.5 98 38.8
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 5.0e-07 58.2 80 43.8
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 5.0e-07 58.2 90 38.9
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 5.0e-07 58.2 85 37.6
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 6.6e-07 57.8 81 42.0
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 8.6e-07 57.4 96 39.6
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 1.1e-06 57.0 92 40.2
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 1.1e-06 57.0 80 43.8
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 1.1e-06 57.0 76 40.8
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 1.1e-06 57.0 84 39.3
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.9e-06 56.2 62 48.4
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.5e-06 55.8 77 39.0


User provided reference genes

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