Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 3.2e-295 1017.7 520 100.0
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 5.3e-181 638.3 462 70.6
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 2.9e-179 632.5 464 69.6
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 4.2e-178 628.6 448 70.1
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.3e-176 623.6 493 65.9
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.5e-175 620.2 504 64.3
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 9.3e-170 600.9 445 69.9
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 4.8e-166 588.6 492 63.8
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 7.6e-164 581.3 469 65.0
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.0e-163 580.9 409 73.3
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 1.3e-163 580.5 511 62.4
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 2.1e-161 573.2 525 59.0
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 2.1e-161 573.2 523 61.0
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 1.8e-160 570.1 467 65.5
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 1.6e-158 563.5 523 59.5
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 8.2e-158 561.2 455 64.6
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 1.1e-157 560.8 428 67.8
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 1.4e-157 560.5 418 69.4
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 2.0e-156 556.6 521 60.5
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 8.5e-155 551.2 468 62.6
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 7.2e-154 548.1 522 57.9
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 1.6e-153 547.0 509 57.8
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 6.1e-153 545.0 527 57.1
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.8e-152 543.5 476 60.1
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 2.8e-150 536.2 442 65.2
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 1.1e-149 534.3 462 60.0
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 4.1e-149 532.3 469 60.3
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 6.9e-149 531.6 472 59.7
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.7e-147 526.9 533 56.5
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.9e-147 526.2 532 55.8
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 3.8e-147 525.8 509 57.6
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 5.0e-147 525.4 532 55.8
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 5.0e-147 525.4 525 56.6
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 3.2e-146 522.7 462 60.0
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 6.1e-145 518.5 493 58.0
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 1.4e-144 517.3 420 65.2
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 6.7e-144 515.0 442 62.4
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 4.4e-143 512.3 398 66.3
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 2.8e-142 509.6 473 58.8
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 1.4e-141 507.3 456 59.2
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 1.5e-140 503.8 364 71.4
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 1.0e-139 501.1 461 58.6
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 2.9e-139 499.6 440 60.0
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 2.5e-138 496.5 443 59.4
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 3.2e-138 496.1 456 56.8
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 1.8e-136 490.3 446 58.1
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 8.8e-136 488.0 446 58.1
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 2.0e-135 486.9 448 58.3
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 2.0e-135 486.9 447 57.7
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 5.7e-135 485.3 413 63.0
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 1.3e-134 484.2 458 59.0
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 1.7e-134 483.8 462 58.0
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 5.9e-132 475.3 447 57.5
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 2.2e-131 473.4 395 63.5
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 5.0e-131 472.2 476 55.0
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 3.2e-130 469.5 463 55.7
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 7.2e-130 468.4 455 56.7
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 9.4e-130 468.0 513 53.0
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 4.7e-129 465.7 522 52.1
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 4.7e-129 465.7 491 54.8
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.8e-128 463.8 476 54.6
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.2e-126 456.8 391 60.1
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 1.1e-125 454.5 448 55.4
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 1.8e-125 453.8 520 51.3
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 4.5e-124 449.1 530 50.4
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 1.3e-123 447.6 447 55.0
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 2.9e-123 446.4 455 55.2
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 8.5e-123 444.9 469 55.4
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.1e-122 444.5 462 55.2
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 1.5e-122 444.1 457 55.8
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 1.5e-122 444.1 462 55.2
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 1.2e-121 441.0 461 49.9
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 2.3e-120 436.8 447 54.6
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 5.2e-120 435.6 457 50.3
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 6.8e-120 435.3 452 55.1
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 2.6e-119 433.3 452 54.9
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 1.1e-117 427.9 523 49.3
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 1.6e-116 424.1 400 58.0
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 3.7e-110 402.9 410 52.2
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.4e-109 399.1 570 42.3
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 5.6e-106 389.0 398 52.3
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 9.5e-106 388.3 306 66.7
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 2.8e-105 386.7 457 50.1
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.6e-100 370.9 395 50.1
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 3.5e-100 369.8 326 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 2.8e-97 360.1 444 47.3
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 1.3e-91 341.3 317 57.4
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 6.8e-88 328.9 328 53.7
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 1.6e-81 307.8 364 46.4
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 5.8e-79 299.3 197 78.7
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.8e-70 270.0 330 45.5
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 2.7e-68 263.8 166 78.3
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 5.1e-67 259.6 270 50.7
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 3.3e-66 256.9 194 69.1
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 5.6e-66 256.1 194 68.6
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 1.8e-64 251.1 348 44.0
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 3.4e-63 246.9 261 51.0
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 2.4e-61 240.7 252 50.8
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.8e-59 234.6 275 49.5
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 9.6e-58 228.8 180 65.6
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 3.2e-53 213.8 166 66.9
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 2.1e-52 211.1 268 46.6
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 1.6e-49 201.4 314 43.3
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.1e-48 198.7 213 48.8
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 2.4e-48 197.6 334 42.2
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 2.2e-46 191.0 306 39.2
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 3.2e-45 187.2 173 60.7
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 7.2e-45 186.0 261 42.1
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 1.5e-42 178.3 251 43.0
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.2e-41 174.5 123 69.1
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.1e-40 172.2 194 46.4
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.4e-40 171.8 194 46.4
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 9.0e-40 169.1 107 79.4
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 3.4e-39 167.2 151 57.0
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.7e-38 164.9 140 57.9
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 1.4e-35 155.2 370 34.6
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 4.1e-32 143.7 144 54.9
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 1.8e-27 128.3 152 42.1
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 2.8e-25 120.9 104 63.5
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 7.0e-24 116.3 80 75.0
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 7.2e-21 106.3 136 44.1
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 6.1e-20 103.2 66 78.8
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 3.3e-18 97.4 90 62.2
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 8.2e-17 92.8 61 73.8
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 7.0e-16 89.7 70 58.6
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 3.8e-14 84.0 78 50.0
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 8.5e-14 82.8 157 35.7
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 8.0e-12 76.3 45 73.3
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 8.0e-12 76.3 45 73.3
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 2.2e-09 68.2 92 38.0
Os01g0210800 Oryza sativa ssp. japonica HOM05D006050 ORTHO05D007457 1.7e-06 58.5 79 41.8


User provided reference genes

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