Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 2.5e-153 545.4 281 100.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.2e-134 483.4 281 87.9
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.5e-134 483.0 281 86.8
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 9.9e-134 480.3 256 89.8
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 9.9e-134 480.3 281 87.9
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.2e-133 479.2 281 88.3
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.8e-133 478.4 256 89.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 3.8e-133 478.4 252 91.3
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 6.4e-133 477.6 281 87.5
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 8.4e-133 477.2 281 87.2
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.1e-132 476.9 252 90.9
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.4e-132 476.5 285 87.0
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 2.4e-132 475.7 253 89.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.2e-132 475.3 255 89.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 3.2e-132 475.3 281 87.5
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 4.2e-132 474.9 250 90.4
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 4.2e-132 474.9 250 90.4
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 4.2e-132 474.9 281 84.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 5.4e-132 474.6 255 88.6
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 5.4e-132 474.6 251 90.4
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 5.4e-132 474.6 285 87.0
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 7.1e-132 474.2 251 90.0
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 7.1e-132 474.2 251 91.2
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 9.3e-132 473.8 250 90.8
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 9.3e-132 473.8 254 89.0
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.2e-131 473.4 253 89.7
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 1.2e-131 473.4 253 88.9
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 2.7e-131 472.2 281 85.4
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 3.5e-131 471.9 284 86.6
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 4.6e-131 471.5 257 88.7
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 4.6e-131 471.5 299 83.6
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 6.0e-131 471.1 250 89.6
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 7.9e-131 470.7 249 90.0
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.0e-130 470.3 283 85.2
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.0e-130 470.3 285 81.8
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.0e-130 470.3 249 90.4
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.0e-130 470.3 255 89.8
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 1.8e-130 469.5 249 90.0
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.8e-130 469.5 282 81.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 2.3e-130 469.2 250 89.6
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.0e-130 468.8 249 89.6
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 5.1e-130 468.0 255 88.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 6.7e-130 467.6 250 89.2
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 6.7e-130 467.6 249 89.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 6.7e-130 467.6 281 86.8
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 6.7e-130 467.6 251 87.6
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 8.7e-130 467.2 281 86.5
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.1e-129 466.8 255 87.5
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.1e-129 466.8 253 88.5
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 1.1e-129 466.8 249 90.4
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.5e-129 466.5 253 88.9
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.9e-129 466.1 286 85.7
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.9e-129 466.1 246 89.4
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.5e-129 465.7 254 87.0
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 3.3e-129 465.3 256 85.9
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 4.3e-129 464.9 249 89.2
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 4.3e-129 464.9 281 82.9
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 4.3e-129 464.9 254 87.0
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 4.3e-129 464.9 255 89.0
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.3e-129 464.9 255 89.0
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.3e-129 464.9 255 89.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 4.3e-129 464.9 255 88.2
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 7.4e-129 464.2 281 84.7
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 7.4e-129 464.2 251 88.0
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 9.6e-129 463.8 281 85.1
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 9.6e-129 463.8 253 87.7
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.3e-128 463.4 281 84.3
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.6e-128 463.0 250 89.2
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.6e-128 463.0 249 89.6
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-128 462.6 255 88.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.1e-128 462.6 249 89.2
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 2.8e-128 462.2 250 88.8
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 2.8e-128 462.2 292 83.6
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 3.6e-128 461.8 252 87.7
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 4.8e-128 461.5 249 89.2
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 8.1e-128 460.7 249 89.2
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.4e-127 459.9 246 89.0
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-127 459.5 277 85.2
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 2.4e-127 459.1 242 91.3
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 3.1e-127 458.8 250 88.0
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 5.3e-127 458.0 255 87.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 6.9e-127 457.6 251 88.0
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 6.9e-127 457.6 247 87.9
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.0e-126 456.1 245 90.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.6e-126 455.7 246 88.2
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 9.9e-126 453.8 254 87.4
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 2.9e-125 452.2 250 86.0
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 6.7e-122 441.0 253 83.0
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 2.5e-121 439.1 250 85.2
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 2.1e-120 436.0 248 85.1
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 2.9e-117 425.6 249 84.7
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 6.5e-117 424.5 355 63.9
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 6.5e-117 424.5 228 90.8
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 1.1e-116 423.7 223 91.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.4e-116 423.3 249 81.5
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 5.5e-116 421.4 239 83.7
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 1.0e-114 417.2 267 78.7
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.5e-113 413.3 242 81.8
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.1e-111 407.1 252 79.8
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 5.5e-108 394.8 251 75.7
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.1e-107 392.9 224 86.6
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 7.9e-99 364.4 191 93.2
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 7.7e-94 347.8 244 69.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.0e-93 347.4 189 89.4
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.1e-87 324.3 171 92.4
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.6e-86 323.6 171 91.2
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.1e-83 313.2 168 89.9
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.1e-83 313.2 181 86.2
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.0e-82 308.9 165 89.1
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 3.3e-81 305.8 183 83.1
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 6.5e-77 291.6 185 77.3
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.1e-75 285.0 164 85.4
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.8e-74 281.6 164 82.9
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.8e-74 281.6 164 84.8
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.7e-72 276.9 145 93.1
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.9e-69 266.2 147 89.8
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.1e-68 264.2 155 85.8
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-68 263.1 213 66.2
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.5e-68 261.9 177 75.1
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.8e-67 259.6 155 84.5
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.0e-66 257.7 152 82.9
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-63 247.3 156 78.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.8e-59 233.0 158 75.3
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 2.5e-52 209.9 185 56.8
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-51 206.8 151 70.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 8.9e-50 201.4 141 73.0
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 3.4e-41 172.9 93 88.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 8.6e-37 158.3 167 54.5
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 1.4e-31 141.0 76 90.8
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 5.1e-29 132.5 90 81.1
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.5e-28 131.0 129 56.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 6.2e-27 125.6 71 83.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.7e-24 117.5 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.0e-17 94.0 55 78.2
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 5.8e-17 92.4 55 76.4
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.6e-14 84.3 49 77.6
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.7e-14 83.6 46 80.4
CBR_g19923 Chara braunii HOM05D008439 ORTHO05D011311 3.2e-07 60.1 212 25.5
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 4.6e-06 56.2 84 41.7


User provided reference genes

Program Settings