Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.8e-202 708.4 355 100.0
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 6.2e-125 451.4 296 75.7
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.4e-124 450.3 296 74.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.8e-124 449.9 296 74.3
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 2.4e-124 449.5 296 75.0
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 6.9e-124 448.0 296 76.7
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 9.0e-124 447.6 296 76.0
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.2e-123 447.2 296 74.3
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.2e-123 447.2 296 75.0
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.5e-123 445.3 297 74.7
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 7.6e-123 444.5 297 74.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.7e-122 443.4 296 75.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.7e-122 443.4 297 74.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.9e-122 442.6 296 75.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 6.4e-122 441.4 297 74.7
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.4e-121 440.3 296 73.3
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.4e-121 440.3 296 73.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.4e-121 440.3 299 74.6
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 4.2e-121 438.7 297 74.7
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 7.1e-121 438.0 299 72.6
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.2e-120 437.2 296 73.3
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.6e-120 436.8 296 73.0
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.7e-120 436.0 296 71.6
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.5e-120 435.6 299 73.9
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 4.6e-120 435.3 285 76.1
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 4.6e-120 435.3 297 72.4
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 6.0e-120 434.9 296 73.0
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 6.0e-120 434.9 299 72.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.8e-117 425.2 295 72.2
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.8e-116 423.3 299 72.2
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.8e-116 423.3 298 71.5
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 9.0e-116 421.0 299 69.9
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 2.0e-115 419.9 298 70.1
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.0e-115 419.9 296 70.6
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.4e-115 419.1 296 70.6
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 3.4e-115 419.1 297 69.7
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 7.6e-115 417.9 300 69.3
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 7.6e-115 417.9 295 70.8
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.0e-114 417.5 305 68.5
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.3e-114 417.2 300 69.3
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 2.9e-114 416.0 295 70.2
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 3.8e-114 415.6 320 66.2
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 6.5e-114 414.8 299 69.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 8.4e-114 414.5 297 69.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.1e-113 414.1 309 69.9
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.4e-113 413.7 296 69.9
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 3.2e-113 412.5 302 69.9
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 5.5e-113 411.8 311 68.2
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 7.1e-113 411.4 303 68.6
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.6e-112 410.2 298 70.8
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.1e-112 409.8 295 70.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 2.7e-112 409.5 296 69.9
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 4.6e-112 408.7 298 69.5
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 7.9e-112 407.9 296 69.3
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 7.9e-112 407.9 299 68.2
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.0e-111 407.5 297 67.7
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.8e-111 406.8 252 78.2
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.3e-111 406.4 300 68.7
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 3.0e-111 406.0 301 68.1
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 5.1e-111 405.2 296 69.3
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 5.1e-111 405.2 299 68.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 5.1e-111 405.2 295 67.8
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 6.7e-111 404.8 296 67.6
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 6.7e-111 404.8 232 82.3
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.5e-110 403.7 296 67.2
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 2.5e-110 402.9 331 64.0
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 9.7e-110 401.0 296 66.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.3e-109 400.6 296 66.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.3e-109 400.6 298 67.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.2e-109 399.8 283 71.4
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 4.8e-109 398.7 298 66.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.1e-108 397.5 254 74.8
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.4e-108 397.1 296 65.9
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.4e-108 396.4 250 78.8
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 3.1e-108 396.0 297 65.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.1e-108 396.0 296 65.2
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 4.1e-108 395.6 328 65.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 4.1e-108 395.6 296 65.9
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 5.3e-108 395.2 296 65.9
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 5.3e-108 395.2 250 78.0
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 6.9e-108 394.8 299 65.6
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 6.9e-108 394.8 299 65.6
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 6.9e-108 394.8 299 65.6
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 6.9e-108 394.8 295 66.8
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 9.0e-108 394.4 296 66.9
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.5e-107 393.7 301 70.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 2.0e-107 393.3 297 65.7
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.0e-107 393.3 327 61.8
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.0e-107 393.3 297 65.3
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 4.5e-107 392.1 296 67.9
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.1e-105 387.5 367 56.4
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 4.2e-105 385.6 297 66.0
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 5.5e-105 385.2 297 64.3
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 7.2e-105 384.8 254 73.6
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 9.4e-105 384.4 297 63.3
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 2.1e-104 383.3 334 61.1
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.0e-103 380.9 302 65.9
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.8e-103 380.2 302 65.9
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 3.9e-103 379.0 303 64.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.1e-100 370.9 302 64.6
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 2.4e-100 369.8 221 78.7
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 3.1e-100 369.4 284 65.8
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.0e-99 366.7 295 63.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.4e-99 365.9 226 75.2
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 2.9e-98 362.8 261 75.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 5.0e-98 362.1 242 72.7
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.1e-97 360.9 295 61.0
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 4.2e-97 359.0 296 64.2
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 5.5e-97 358.6 224 75.4
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 5.5e-97 358.6 270 66.3
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.0e-95 354.4 350 54.3
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.0e-95 354.4 257 70.8
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.6e-94 349.7 254 68.1
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 9.7e-94 347.8 297 60.3
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 3.7e-85 319.3 222 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 6.3e-85 318.5 223 66.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.1e-84 317.8 240 66.7
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.8e-84 317.0 264 61.0
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 4.1e-84 315.8 261 61.3
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 5.9e-83 312.0 225 64.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.2e-82 310.1 202 73.8
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.4e-81 304.7 210 68.6
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 3.1e-76 289.7 219 63.0
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.4e-71 274.2 288 52.8
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 5.7e-70 268.9 249 52.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.8e-68 263.8 235 58.3
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.1e-68 261.5 425 40.5
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 5.2e-63 245.7 142 84.5
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 8.3e-61 238.4 225 52.9
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 4.1e-60 236.1 142 78.2
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-59 234.2 221 50.7
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.6e-59 234.2 221 50.7
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.0e-55 221.5 133 78.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 9.8e-54 214.9 254 45.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.9e-53 212.6 251 45.4
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.0e-51 207.2 185 56.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 7.8e-51 205.3 252 43.3
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 6.6e-50 202.2 156 68.6
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.2e-46 191.4 140 67.9
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.3e-42 177.2 168 56.5
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 6.6e-42 175.6 112 75.9
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.2e-40 169.1 99 83.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.7e-37 161.0 97 82.5
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 3.0e-34 150.2 109 62.4
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 5.8e-30 136.0 139 52.5
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.9e-29 133.7 163 52.1
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-28 131.7 101 68.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.5e-27 126.7 154 51.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 8.7e-26 122.1 92 67.4
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 6.4e-21 105.9 67 76.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 2.4e-15 87.4 123 47.2
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 7.9e-11 72.4 177 33.9
Gohir.A11G205650 Gossypium hirsutum HOM05D041477 ORTHO05D216126 4.5e-06 56.6 34 79.4


User provided reference genes

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