Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 1.9e-74 282.3 137 100.0
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 2.9e-54 215.3 132 80.3
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 3.5e-52 208.4 132 76.5
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.0e-51 206.8 137 75.9
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.1e-50 203.4 132 75.0
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 1.5e-50 203.0 132 72.0
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 1.9e-50 202.6 132 75.8
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 3.3e-50 201.8 132 76.5
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 3.3e-50 201.8 134 77.6
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 4.3e-50 201.4 133 77.4
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 4.3e-50 201.4 132 75.0
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 9.7e-50 200.3 131 74.8
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.6e-49 199.5 136 73.5
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.6e-49 199.5 136 73.5
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 6.3e-49 197.6 132 74.2
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 1.8e-48 196.1 138 68.8
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 6.9e-48 194.1 143 65.0
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 6.9e-48 194.1 143 65.0
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 6.9e-48 194.1 132 71.2
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 6.9e-48 194.1 132 73.5
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 1.5e-47 193.0 140 69.3
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 2.0e-47 192.6 134 70.9
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.6e-47 192.2 133 71.4
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 2.6e-47 192.2 135 71.1
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 3.4e-47 191.8 143 64.3
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 3.4e-47 191.8 143 64.3
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 3.4e-47 191.8 143 64.3
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 3.4e-47 191.8 139 73.4
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 7.7e-47 190.7 132 73.5
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 7.7e-47 190.7 134 70.1
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 7.7e-47 190.7 133 69.9
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 7.7e-47 190.7 133 72.2
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 1.3e-46 189.9 126 72.2
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.7e-46 189.5 132 73.5
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 1.7e-46 189.5 132 71.2
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 2.2e-46 189.1 134 70.9
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 2.2e-46 189.1 133 71.4
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 2.9e-46 188.7 132 73.5
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 3.8e-46 188.3 134 70.9
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 5.0e-46 188.0 140 71.4
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 5.0e-46 188.0 140 71.4
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 8.5e-46 187.2 124 71.8
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 8.5e-46 187.2 144 63.2
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 8.5e-46 187.2 144 63.2
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 8.5e-46 187.2 144 63.2
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 1.1e-45 186.8 127 71.7
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 1.1e-45 186.8 113 77.0
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 1.4e-45 186.4 148 64.9
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 1.9e-45 186.0 133 71.4
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 1.9e-45 186.0 132 71.2
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.5e-45 185.7 140 67.1
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 3.2e-45 185.3 111 78.4
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 5.5e-45 184.5 149 63.1
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 7.2e-45 184.1 133 67.7
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 7.2e-45 184.1 133 67.7
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 9.4e-45 183.7 101 82.2
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 9.4e-45 183.7 101 82.2
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 9.4e-45 183.7 133 70.7
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 9.4e-45 183.7 136 69.9
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 9.4e-45 183.7 143 69.2
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 1.2e-44 183.3 149 62.4
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 1.6e-44 183.0 141 71.6
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 2.1e-44 182.6 101 82.2
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 2.1e-44 182.6 137 70.8
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 2.7e-44 182.2 101 82.2
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 2.7e-44 182.2 132 65.9
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 2.7e-44 182.2 134 70.9
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 3.6e-44 181.8 137 67.9
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 4.6e-44 181.4 132 68.9
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 4.6e-44 181.4 131 71.8
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 4.6e-44 181.4 101 80.2
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 6.1e-44 181.0 140 64.3
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 7.9e-44 180.6 140 69.3
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 1.4e-43 179.9 139 68.3
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 1.8e-43 179.5 131 67.2
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 1.8e-43 179.5 131 67.2
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 2.3e-43 179.1 147 63.3
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 2.3e-43 179.1 133 69.9
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 2.3e-43 179.1 124 72.6
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 3.0e-43 178.7 127 68.5
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 5.1e-43 177.9 127 69.3
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 5.1e-43 177.9 102 81.4
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 6.7e-43 177.6 144 62.5
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 1.1e-42 176.8 115 71.3
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.1e-42 176.8 127 66.9
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 2.0e-42 176.0 108 76.9
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 3.3e-42 175.3 105 76.2
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 7.4e-42 174.1 139 64.0
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 9.7e-42 173.7 133 65.4
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 9.7e-42 173.7 99 81.8
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 9.7e-42 173.7 139 63.3
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 9.7e-42 173.7 134 67.2
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 1.3e-41 173.3 134 65.7
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 1.3e-41 173.3 126 66.7
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 6.3e-41 171.0 135 67.4
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 3.1e-40 168.7 136 62.5
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 5.3e-40 167.9 135 63.0
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 6.9e-40 167.5 111 70.3
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 9.1e-40 167.2 124 66.9
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 1.3e-38 163.3 96 76.0
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 3.8e-38 161.8 111 72.1
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 5.0e-38 161.4 111 72.1
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 1.4e-37 159.8 96 77.1
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 1.2e-36 156.8 100 68.0
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 7.9e-36 154.1 140 55.7
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 7.9e-36 154.1 137 58.4
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 7.9e-36 154.1 137 58.4
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 7.4e-34 147.5 118 54.2
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.3e-33 146.7 126 54.8
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 3.1e-32 142.1 106 70.8
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 7.0e-32 141.0 115 53.9
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 4.5e-31 138.3 103 62.1
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 1.4e-29 133.3 76 82.9
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 1.4e-27 126.7 132 50.0
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 1.8e-27 126.3 109 54.1
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 3.0e-27 125.6 103 55.3
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 1.3e-25 120.2 76 75.0
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 2.8e-25 119.0 109 54.1
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 3.7e-25 118.6 104 55.8
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 9.4e-21 104.0 52 82.7
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 2.7e-20 102.4 102 47.1
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 8.8e-19 97.4 76 50.0
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 4.4e-18 95.1 58 79.3
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 5.9e-15 84.7 70 60.0
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 3.8e-14 82.0 71 59.2
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 4.4e-10 68.6 54 63.0
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 2.4e-08 62.8 55 54.5


User provided reference genes

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