Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 1.3e-38 162.5 77 100.0
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 6.7e-32 140.2 76 85.5
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 6.7e-32 140.2 76 84.2
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 1.1e-31 139.4 76 82.9
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 1.1e-31 139.4 76 82.9
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 1.5e-31 139.0 76 84.2
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 1.5e-31 139.0 76 85.5
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 1.5e-31 139.0 76 81.6
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 3.3e-31 137.9 76 82.9
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 3.3e-31 137.9 76 80.3
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 4.3e-31 137.5 76 82.9
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 4.3e-31 137.5 76 82.9
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 5.6e-31 137.1 76 80.3
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 5.6e-31 137.1 77 83.1
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 5.6e-31 137.1 76 85.5
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 7.4e-31 136.7 76 81.6
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 7.4e-31 136.7 76 82.9
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 9.6e-31 136.3 76 81.6
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 9.6e-31 136.3 76 82.9
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 9.6e-31 136.3 76 82.9
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 1.6e-30 135.6 76 81.6
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 1.6e-30 135.6 76 81.6
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 1.6e-30 135.6 76 81.6
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 1.6e-30 135.6 76 80.3
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 1.6e-30 135.6 76 80.3
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 2.1e-30 135.2 76 82.9
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 2.1e-30 135.2 76 82.9
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 2.8e-30 134.8 76 81.6
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 2.8e-30 134.8 77 83.1
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 2.8e-30 134.8 76 82.9
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 2.8e-30 134.8 76 81.6
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 3.7e-30 134.4 77 79.2
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 3.7e-30 134.4 76 80.3
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 4.8e-30 134.0 76 81.6
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 4.8e-30 134.0 76 81.6
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 6.2e-30 133.7 76 80.3
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 6.2e-30 133.7 76 80.3
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 6.2e-30 133.7 76 81.6
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 8.1e-30 133.3 77 83.1
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 8.1e-30 133.3 76 81.6
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 1.1e-29 132.9 76 80.3
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 1.1e-29 132.9 77 80.5
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 1.4e-29 132.5 76 78.9
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 1.4e-29 132.5 77 79.2
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 1.4e-29 132.5 76 82.9
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 1.4e-29 132.5 76 78.9
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 1.8e-29 132.1 76 78.9
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 1.8e-29 132.1 76 80.3
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 1.8e-29 132.1 76 81.6
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 2.4e-29 131.7 76 81.6
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 2.4e-29 131.7 76 80.3
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 2.4e-29 131.7 76 80.3
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 3.1e-29 131.3 77 80.5
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 3.1e-29 131.3 77 77.9
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 3.1e-29 131.3 76 80.3
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 3.1e-29 131.3 76 81.6
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 4.0e-29 131.0 76 78.9
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 4.0e-29 131.0 76 78.9
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 4.0e-29 131.0 77 81.8
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 4.0e-29 131.0 77 77.9
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 4.0e-29 131.0 76 77.6
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 5.3e-29 130.6 77 80.5
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 5.3e-29 130.6 76 77.6
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 5.3e-29 130.6 76 80.3
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 5.3e-29 130.6 76 80.3
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 6.9e-29 130.2 74 82.4
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 9.0e-29 129.8 77 80.5
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 1.2e-28 129.4 77 77.9
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 1.2e-28 129.4 77 76.6
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 1.5e-28 129.0 77 77.9
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 2.0e-28 128.6 76 75.0
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 2.0e-28 128.6 74 79.7
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 2.6e-28 128.3 77 76.6
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 2.6e-28 128.3 76 78.9
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 3.4e-28 127.9 76 78.9
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 5.8e-28 127.1 76 78.9
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 5.8e-28 127.1 77 77.9
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 5.8e-28 127.1 74 78.4
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 7.6e-28 126.7 76 77.6
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 1.0e-27 126.3 76 73.7
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 1.0e-27 126.3 76 78.9
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 3.8e-27 124.4 76 76.3
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 1.1e-26 122.9 76 75.0
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 4.2e-26 120.9 82 72.0
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 7.1e-26 120.2 77 76.6
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 1.2e-25 119.4 77 71.4
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 8.7e-24 113.2 76 69.7
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 1.6e-22 109.0 62 79.0
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.1e-22 108.6 63 81.0
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 2.1e-22 108.6 74 68.9
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 1.1e-21 106.3 76 65.8
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 9.0e-21 103.2 76 69.7
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.9e-19 98.2 57 80.7
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 3.8e-19 97.8 84 53.6
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 3.8e-19 97.8 82 57.3
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 9.3e-18 93.2 76 55.3
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 7.9e-17 90.1 77 57.1
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 2.3e-16 88.6 88 47.7
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 3.3e-15 84.7 67 62.7
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 7.7e-12 73.6 97 39.2
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 1.5e-07 59.3 74 41.9


User provided reference genes

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