Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 4.6e-178 627.9 334 100.0
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.2e-91 338.2 324 61.7
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 1.2e-90 337.4 323 61.3
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 8.0e-90 334.7 336 61.3
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 8.0e-90 334.7 321 62.3
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.2e-89 332.0 324 60.8
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 4.3e-83 312.4 323 56.7
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.8e-82 309.7 333 57.1
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.2e-80 304.3 324 57.7
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.2e-80 304.3 324 57.7
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 2.0e-80 303.5 322 55.3
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 9.8e-80 301.2 324 57.1
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 2.9e-79 299.7 323 55.1
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 2.0e-77 293.5 324 54.9
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.9e-77 292.0 323 53.6
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 3.9e-76 289.3 323 55.7
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.9e-76 289.3 329 53.8
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 3.3e-75 286.2 323 57.6
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 5.6e-75 285.4 329 53.5
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 1.2e-74 284.3 300 55.3
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 3.1e-73 279.6 331 53.2
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 3.1e-73 279.6 337 52.8
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 5.2e-73 278.9 349 49.9
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 5.2e-73 278.9 349 49.9
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 8.9e-73 278.1 336 52.4
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 5.4e-70 268.9 313 52.4
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 1.6e-69 267.3 319 52.4
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 2.7e-69 266.5 318 52.8
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 1.3e-68 264.2 316 52.8
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.7e-68 263.8 339 50.1
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.5e-67 260.8 325 52.6
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 4.3e-67 259.2 311 49.8
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 3.6e-66 256.1 336 49.1
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 4.7e-66 255.8 312 51.3
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.0e-64 250.4 321 49.8
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 2.6e-64 250.0 321 49.8
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 2.6e-64 250.0 327 50.2
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 5.8e-64 248.8 331 47.7
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 7.5e-64 248.4 310 51.6
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 7.5e-64 248.4 323 49.5
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 2.2e-63 246.9 310 50.3
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.9e-63 246.5 327 49.2
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.9e-63 246.5 318 49.1
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 3.7e-63 246.1 317 47.9
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.9e-63 245.7 327 49.2
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 6.4e-63 245.4 327 49.2
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 6.4e-63 245.4 323 48.6
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 6.4e-63 245.4 310 50.0
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.4e-62 244.2 319 49.2
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.9e-62 243.8 327 50.8
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 7.1e-62 241.9 321 48.3
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 7.1e-62 241.9 312 47.8
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 9.2e-62 241.5 335 48.4
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.2e-61 241.1 332 47.3
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 1.6e-61 240.7 314 50.6
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 1.0e-60 238.0 312 50.3
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 1.7e-60 237.3 311 47.3
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.5e-59 234.2 339 47.5
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 2.5e-59 233.4 311 48.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 4.3e-59 232.6 327 47.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 5.6e-59 232.3 326 47.9
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 7.3e-59 231.9 295 52.2
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 1.2e-58 231.1 310 47.4
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 1.6e-58 230.7 314 47.5
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.1e-58 230.3 312 46.8
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.1e-57 228.0 329 48.0
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.1e-57 228.0 307 45.3
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 3.1e-57 226.5 316 44.9
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 3.1e-57 226.5 309 48.2
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 4.0e-57 226.1 324 45.1
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 6.8e-57 225.3 262 53.4
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 1.2e-56 224.6 308 45.8
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 1.5e-56 224.2 324 43.8
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 3.4e-56 223.0 324 44.4
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 4.4e-56 222.6 288 48.3
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 5.8e-56 222.2 309 46.0
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 7.6e-56 221.9 325 44.3
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 7.6e-56 221.9 324 44.1
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 9.9e-56 221.5 312 44.6
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.3e-55 221.1 312 44.2
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 1.3e-55 221.1 324 43.8
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.7e-55 220.7 313 44.4
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 2.2e-55 220.3 301 48.5
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 2.9e-55 219.9 325 44.6
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.8e-55 219.5 325 44.6
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 4.9e-55 219.2 263 52.5
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.4e-54 217.6 324 43.2
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.4e-54 217.6 324 43.2
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 2.4e-54 216.9 265 50.6
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 3.2e-54 216.5 328 43.6
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 3.2e-54 216.5 300 48.3
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 4.1e-54 216.1 315 43.2
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 7.1e-54 215.3 317 42.6
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 9.2e-54 214.9 322 44.7
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.6e-53 214.2 323 44.3
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 2.1e-53 213.8 317 43.2
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 2.1e-53 213.8 318 45.3
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 3.5e-53 213.0 324 42.9
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 3.5e-53 213.0 324 42.9
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 4.6e-53 212.6 326 43.6
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.7e-52 210.7 321 44.5
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 3.0e-52 209.9 316 44.9
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.1e-51 208.0 315 43.2
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 2.5e-51 206.8 311 46.0
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 5.6e-51 205.7 314 44.9
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 5.6e-51 205.7 325 41.8
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 7.3e-51 205.3 323 41.5
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.2e-48 198.0 304 44.1
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 1.3e-47 194.5 325 43.1
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.7e-47 194.1 312 44.6
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.9e-46 190.7 318 43.1
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 2.4e-46 190.3 318 43.1
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 7.1e-46 188.7 263 44.1
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.3e-44 183.7 199 56.8
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 5.1e-44 182.6 297 40.4
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 2.5e-43 180.3 296 38.5
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 5.6e-43 179.1 288 39.6
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.9e-39 166.8 292 39.0
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 3.8e-39 166.4 292 39.0
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.3e-34 151.4 172 52.9
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 2.5e-27 127.1 254 37.8
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.4e-25 121.3 256 39.5
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 4.0e-25 119.8 189 45.5
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 9.0e-25 118.6 104 61.5
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 6.5e-23 112.5 172 43.6
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 1.3e-12 78.2 327 26.6
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 8.7e-12 75.5 139 40.3
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 5.9e-08 62.8 130 39.2
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.0e-07 62.0 94 41.5
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.4e-06 58.2 65 50.8


User provided reference genes

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