Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.2e-55 219.5 110 100.0
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 1.1e-30 136.7 111 69.4
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 1.7e-25 119.4 75 85.3
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 7.3e-24 114.0 75 80.0
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.3e-24 114.0 75 80.0
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 7.3e-24 114.0 75 80.0
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.2e-23 113.2 75 80.0
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.6e-23 112.8 75 78.7
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 2.1e-23 112.5 75 78.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 2.1e-23 112.5 73 79.5
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 2.1e-23 112.5 75 76.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 2.8e-23 112.1 75 77.3
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 2.8e-23 112.1 75 77.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 4.7e-23 111.3 75 74.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 4.7e-23 111.3 75 77.3
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 6.2e-23 110.9 75 78.7
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 6.2e-23 110.9 75 78.7
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 6.2e-23 110.9 74 77.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 8.1e-23 110.5 75 76.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 8.1e-23 110.5 75 76.0
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 8.1e-23 110.5 75 76.0
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 8.1e-23 110.5 75 77.3
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.1e-22 110.2 75 76.0
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.1e-22 110.2 73 76.7
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-22 110.2 75 76.0
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 1.1e-22 110.2 73 78.1
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 1.1e-22 110.2 73 78.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 1.4e-22 109.8 75 77.3
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 1.4e-22 109.8 75 76.0
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.4e-22 109.8 75 76.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 1.8e-22 109.4 75 76.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 1.8e-22 109.4 75 76.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.8e-22 109.4 75 76.0
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 2.4e-22 109.0 73 76.7
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 2.4e-22 109.0 75 76.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 3.1e-22 108.6 75 73.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.1e-22 108.6 75 76.0
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 3.1e-22 108.6 75 73.3
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 3.1e-22 108.6 72 76.4
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 3.1e-22 108.6 75 76.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 3.1e-22 108.6 75 74.7
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 4.0e-22 108.2 73 75.3
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 4.0e-22 108.2 75 76.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 4.0e-22 108.2 75 76.0
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 4.0e-22 108.2 75 74.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 4.0e-22 108.2 75 74.7
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 5.2e-22 107.8 74 74.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 6.8e-22 107.5 75 73.3
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 6.8e-22 107.5 75 73.3
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 6.8e-22 107.5 75 73.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 8.9e-22 107.1 75 76.0
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 8.9e-22 107.1 74 74.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 8.9e-22 107.1 74 74.3
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 8.9e-22 107.1 74 74.3
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 8.9e-22 107.1 74 74.3
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.2e-21 106.7 74 73.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.2e-21 106.7 73 74.0
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 1.2e-21 106.7 75 74.7
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.2e-21 106.7 74 73.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 1.2e-21 106.7 75 76.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 1.5e-21 106.3 75 74.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 1.5e-21 106.3 75 73.3
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 1.5e-21 106.3 75 74.7
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 2.0e-21 105.9 75 73.3
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 2.0e-21 105.9 75 73.3
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 2.0e-21 105.9 75 76.0
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 2.0e-21 105.9 73 74.0
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 2.0e-21 105.9 75 73.3
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 2.6e-21 105.5 73 74.0
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 2.6e-21 105.5 73 74.0
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 2.6e-21 105.5 73 74.0
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 2.6e-21 105.5 73 74.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.4e-21 105.1 75 72.0
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 3.4e-21 105.1 73 72.6
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 3.4e-21 105.1 75 70.7
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 4.4e-21 104.8 75 74.7
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 4.4e-21 104.8 73 74.0
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 1.3e-20 103.2 75 73.3
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.7e-20 102.8 73 69.9
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.9e-20 102.1 75 72.0
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 2.9e-20 102.1 75 72.0
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.9e-20 102.1 73 72.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 4.9e-20 101.3 75 70.7
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 4.9e-20 101.3 74 70.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 6.4e-20 100.9 74 73.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 6.4e-20 100.9 75 68.0
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 6.4e-20 100.9 75 70.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 1.1e-19 100.1 75 72.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.1e-19 100.1 75 68.0
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 1.1e-19 100.1 78 66.7
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.4e-19 99.8 75 70.7
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 1.9e-19 99.4 75 66.7
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.4e-19 99.0 75 69.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 3.2e-19 98.6 75 65.3
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 5.4e-19 97.8 75 68.0
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 1.6e-18 96.3 94 56.4
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.6e-18 96.3 72 68.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.6e-18 96.3 72 68.1
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 2.1e-18 95.9 65 73.8
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 2.7e-18 95.5 73 67.1
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 2.7e-18 95.5 73 67.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 3.5e-18 95.1 75 65.3
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.6e-18 94.7 72 66.7
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 1.3e-17 93.2 73 65.8
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 1.7e-17 92.8 62 75.8
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.7e-17 92.8 72 66.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 3.9e-17 91.7 62 72.6
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-14 83.6 58 72.4
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 4.0e-14 81.6 55 74.5
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 4.4e-13 78.2 48 81.2
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 7.6e-13 77.4 70 58.6
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 5.4e-11 71.2 48 72.9
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.5e-08 63.2 54 63.0


User provided reference genes

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