Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 3362.0 1742 100.0
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2543.1 1742 73.7
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2475.7 1743 71.4
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2475.3 1702 73.4
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2471.8 1746 71.9
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2468.0 1713 73.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2460.3 1743 70.9
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2442.5 1741 72.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2439.8 1745 71.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2431.0 1746 71.6
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2429.1 1745 71.5
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2423.7 1744 70.9
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2423.3 1713 72.5
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2421.4 1729 70.8
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2410.2 1734 69.8
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2403.2 1746 70.7
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2395.5 1724 70.2
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2387.5 1744 70.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2374.7 1744 70.5
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2371.7 1745 69.3
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2370.9 1746 69.6
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2370.9 1746 69.9
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2370.5 1751 70.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2370.1 1746 69.5
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2369.3 1722 69.8
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2366.7 1742 68.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2353.9 1759 69.4
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2351.2 1748 68.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2347.4 1742 68.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2339.7 1742 68.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2330.1 1725 68.8
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2327.7 1744 67.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2317.3 1742 67.7
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2315.8 1726 68.9
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2305.0 1678 70.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2304.2 1752 67.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2300.0 1766 68.2
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2293.8 1724 68.0
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2285.0 1747 68.3
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2283.4 1749 67.2
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2280.0 1722 68.2
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2277.7 1724 67.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2275.7 1739 67.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2273.8 1721 67.5
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2273.0 1749 66.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2262.6 1738 67.1
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2256.9 1694 68.1
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2252.2 1746 66.2
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2241.1 1710 67.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2238.4 1743 65.2
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2238.0 1708 66.7
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2238.0 1748 66.1
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2236.5 1700 68.9
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2220.7 1806 64.7
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2214.9 1717 66.6
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2203.7 1715 66.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2189.8 1607 69.7
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2189.5 1734 65.3
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2172.1 1732 64.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2167.9 1699 65.5
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2163.3 1781 64.6
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2162.5 1723 65.1
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2162.5 2134 57.4
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2156.3 1758 64.8
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2153.3 1719 64.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2152.5 1728 64.4
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2142.9 1787 63.8
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2142.5 1728 64.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2141.7 1892 60.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2137.5 1719 64.2
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2131.3 1414 73.3
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2130.5 1718 64.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2126.7 1730 63.9
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2120.9 1711 63.9
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2118.6 1722 63.8
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2109.3 1718 63.6
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2107.8 1720 63.7
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2105.5 1711 64.0
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2093.5 1769 62.8
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2085.8 1765 61.9
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 2020.4 1827 61.2
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2013.0 1712 60.9
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2001.1 1728 59.7
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 2001.1 1680 62.9
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1974.5 1296 72.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1966.0 1290 71.8
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1963.3 1790 59.0
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1917.5 1771 57.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1916.7 1710 59.0
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1894.4 1160 77.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1837.8 1455 64.5
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1777.7 1441 64.6
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1722.6 1535 57.5
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1713.7 1672 53.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1707.2 1672 55.0
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1673.3 1744 51.7
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1666.7 1746 55.8
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1629.0 1748 50.9
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1621.3 1043 74.2
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1572.0 936 80.3
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1491.9 1084 65.2
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1398.6 1168 64.6
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1346.6 1382 54.1
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1327.8 1112 65.0
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1302.3 1187 61.1
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1147.5 909 63.1
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1143.3 942 66.6
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 9.3e-299 1031.2 741 68.2
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.0e-292 1011.1 616 78.6
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 8.5e-268 928.3 1598 38.0
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.5e-261 906.4 601 71.2
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-258 897.9 682 61.7
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.3e-251 873.2 553 76.9
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.0e-244 851.7 814 59.2
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.3e-203 713.8 848 43.5
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 4.8e-186 656.8 427 72.4
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-156 558.9 330 80.6
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 2.8e-154 551.2 374 72.7
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 4.0e-148 530.8 595 60.8
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 4.7e-141 507.3 629 53.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 9.2e-129 466.5 699 39.9
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.3e-127 462.6 913 34.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.1e-109 402.1 428 46.0
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 4.0e-108 397.9 337 63.2
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.2e-105 388.3 241 77.6
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.6e-104 384.4 554 50.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-100 373.2 247 69.6
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.2e-97 361.7 215 73.5
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 7.1e-81 307.4 189 79.4
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.1e-80 305.8 410 52.0
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.4e-74 283.9 176 72.2
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.5e-67 263.1 175 65.7
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 7.9e-64 250.8 153 76.5
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.8e-52 213.0 203 48.3
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.7e-50 206.5 115 87.8
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 2.1e-48 199.5 446 39.5
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 5.9e-43 181.4 98 90.8
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 5.0e-42 178.3 130 61.5
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 9.1e-36 157.5 131 54.2
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.2e-35 157.1 169 50.3
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 3.2e-33 149.1 123 59.3
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 5.5e-33 148.3 205 45.4
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.3e-31 142.9 275 45.8
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 2.2e-29 136.3 226 42.5
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 3.1e-28 132.5 73 91.8
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 3.3e-25 122.5 89 66.3
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.6e-24 120.2 310 42.3
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.6e-24 119.0 63 90.5
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 4.7e-24 118.6 75 85.3
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.0e-23 117.5 93 65.6
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.3e-23 116.3 59 86.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 4.0e-23 115.5 107 55.1
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 4.0e-23 115.5 302 36.4
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 8.9e-23 114.4 83 68.7
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 6.4e-21 108.2 215 36.3
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 8.6e-18 97.8 58 82.8
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.3e-17 95.9 98 48.0
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.6e-16 93.6 84 54.8
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 2.0e-14 86.7 51 74.5
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.6e-14 86.3 50 86.0
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 4.9e-13 82.0 91 60.4
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.1e-12 80.9 94 48.9
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.2e-12 79.3 52 75.0
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.7e-11 76.3 58 60.3
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 3.0e-10 72.8 73 47.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 6.6e-10 71.6 97 42.3
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 8.6e-10 71.2 43 67.4
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.3e-09 69.3 68 51.5
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 7.3e-09 68.2 70 47.1
HanXRQChr13g0412901 Helianthus annuus HOM05D000041 ORTHO05D000452 1.6e-08 67.0 202 28.7
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 8.1e-08 64.7 55 54.5
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.8e-07 63.5 49 63.3
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 4.0e-07 62.4 166 30.1
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 1.5e-06 60.5 41 63.4
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 9.8e-06 57.8 49 63.3


User provided reference genes

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