Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g08100 Coffea canephora HOM05D002981 ORTHO05D003725 2.0e-28 128.3 60 100.0
Rhsim05G0133600 Rhododendron simsii HOM05D002981 ORTHO05D003725 1.6e-20 102.1 55 81.8
vmacro19723 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 1.6e-20 102.1 55 81.8
Aqoxy2G02802 Aquilegia oxysepala HOM05D002981 ORTHO05D003725 2.0e-20 101.7 54 83.3
Cc02_g34820 Coffea canephora HOM05D002981 ORTHO05D003725 2.0e-20 101.7 54 83.3
GSVIVG01031219001 Vitis vinifera HOM05D002981 ORTHO05D003725 2.0e-20 101.7 54 83.3
Dinv24424 Davidia involucrata HOM05D002981 ORTHO05D003725 2.7e-20 101.3 55 80.0
SalBow7G4351 Salvia bowleyana HOM05D002981 ORTHO05D003725 3.5e-20 100.9 54 83.3
MSTRG.27951 Avicennia marina HOM05D002981 ORTHO05D003725 4.6e-20 100.5 54 81.5
unitig_26.g10138 Utricularia gibba HOM05D002981 ORTHO05D003725 4.6e-20 100.5 54 81.5
HanXRQChr10g0299231 Helianthus annuus HOM05D002981 ORTHO05D003725 6.0e-20 100.1 55 78.2
unitig_21.g20026 Utricularia gibba HOM05D002981 ORTHO05D003725 6.0e-20 100.1 54 81.5
Zm00001eb131360 Zea mays HOM05D002981 ORTHO05D003725 6.0e-20 100.1 54 81.5
CDE02G3360 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 7.8e-20 99.8 55 80.0
Migut.N02114 Erythranthe guttata HOM05D002981 ORTHO05D003725 7.8e-20 99.8 54 79.6
Solyc01g100320.3 Solanum lycopersicum HOM05D002981 ORTHO05D003725 7.8e-20 99.8 54 79.6
Sopen01g043830 Solanum pennellii HOM05D002981 ORTHO05D003725 7.8e-20 99.8 54 79.6
CAN.G1273.1 Capsicum annuum HOM05D002981 ORTHO05D003725 1.0e-19 99.4 54 81.5
Ciclev10020618m.g Citrus clementina HOM05D002981 ORTHO05D003725 1.0e-19 99.4 54 81.5
ECA234G2827 Erigeron canadensis HOM05D002981 ORTHO05D003725 1.0e-19 99.4 55 76.4
Oeu053701.1 Olea europaea HOM05D002981 ORTHO05D003725 1.0e-19 99.4 54 81.5
Aa31LG1G28770 Aethionema arabicum HOM05D002981 ORTHO05D003725 1.3e-19 99.0 54 79.6
CSS0025736 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 1.3e-19 99.0 55 78.2
ClCG09G005250 Citrullus lanatus HOM05D002981 ORTHO05D003725 1.3e-19 99.0 54 81.5
Eucgr.K03531 Eucalyptus grandis HOM05D002981 ORTHO05D003725 1.3e-19 99.0 54 81.5
Lalb_Chr02g0146691 Lupinus albus HOM05D002981 ORTHO05D003725 1.3e-19 99.0 55 78.2
Os05g0156300 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 1.3e-19 99.0 54 79.6
BcaC01g05028 Brassica carinata HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
A03p25980 Brassica napus HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
C03p30980 Brassica napus HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
BolC3t15449H Brassica oleracea HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
CDE09G1190 Ceratophyllum demersum HOM05D002981 ORTHO05D003725 1.7e-19 98.6 55 78.2
Dinv30871 Davidia involucrata HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 81.5
Glyma.19G229000 Glycine max HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
Gohir.A12G126400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 81.5
Gohir.D12G129900 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 81.5
Gorai.008G141100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 81.5
Lalb_Chr21g0309481 Lupinus albus HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
Os01g0339900 Oryza sativa ssp. japonica HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
Phvul.007G215900 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
PGR044G1530 Punica granatum HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
TAR633G1423 Trochodendron aralioides HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
Zm00001eb282710 Zea mays HOM05D002981 ORTHO05D003725 1.7e-19 98.6 54 79.6
BcaB01g03165 Brassica carinata HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 77.8
Lj5g0008352 Lotus japonicus HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 79.6
MD04G1195300 Malus domestica HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 79.6
Oeu064809.1 Olea europaea HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 79.6
SalBow3G0105 Salvia bowleyana HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 77.8
PGSC0003DMG400002779 Solanum tuberosum HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 77.8
TAR365G0113 Trochodendron aralioides HOM05D002981 ORTHO05D003725 2.3e-19 98.2 54 79.6
CANSAT54G0071 Cannabis sativa HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 79.6
Glyma.02G014000 Glycine max HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 79.6
Lsat_1_v5_gn_5_102801 Lactuca sativa HOM05D002981 ORTHO05D003725 3.0e-19 97.8 55 76.4
Nitab4.5_0009033g0020 Nicotiana tabacum HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 79.6
Prupe.6G315000 Prunus persica HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 79.6
THA.LOC104817468 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 79.6
vmacro01554 Vaccinium macrocarpon HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 77.8
VMungo0720G0399 Vigna mungo HOM05D002981 ORTHO05D003725 3.0e-19 97.8 54 79.6
arahy.Tifrunner.gnm1.ann1.VAQ4DL Arachis hypogaea HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
AUR62000684 Chenopodium quinoa HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 79.6
AUR62005272 Chenopodium quinoa HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 79.6
Duzib133G0744 Durio zibethinus HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 79.6
Hma1.2p1_0008F-1.1_g005760 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
Nn3g21634 Nelumbo nucifera HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
Nn4g25650 Nelumbo nucifera HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
Peaxi162Scf00673g00127 Petunia axillaris HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
Rhsim11G0094000 Rhododendron simsii HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
Thecc.01G310600 Theobroma cacao HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 79.6
TWI56G0814 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 79.6
TWI75G0141 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
TAR362G0641 Trochodendron aralioides HOM05D002981 ORTHO05D003725 3.9e-19 97.4 54 77.8
BraA03t11815Z Brassica rapa HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
Ca_10298_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
MELO3C015939.2 Cucumis melo HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
FvH4_6g07230 Fragaria vesca HOM05D002981 ORTHO05D003725 5.0e-19 97.1 55 74.5
FAN02G4218 Fragaria x ananassa HOM05D002981 ORTHO05D003725 5.0e-19 97.1 55 74.5
FAN05G2722 Fragaria x ananassa HOM05D002981 ORTHO05D003725 5.0e-19 97.1 55 74.5
FAN09G2340 Fragaria x ananassa HOM05D002981 ORTHO05D003725 5.0e-19 97.1 55 74.5
FAN14G0083 Fragaria x ananassa HOM05D002981 ORTHO05D003725 5.0e-19 97.1 55 74.5
Glyma.03G232000 Glycine max HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 79.6
Gohir.A08G118600 Gossypium hirsutum HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
Gohir.D08G139400 Gossypium hirsutum HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
Gorai.004G143300 Gossypium raimondii HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
Phvul.001G225600 Phaseolus vulgaris HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 75.9
RcHm_v2.0_Chr3g0456861 Rosa chinensis HOM05D002981 ORTHO05D003725 5.0e-19 97.1 55 74.5
Sed0000157 Sechium edule HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
TWI18G0728 Tripterygium wilfordii HOM05D002981 ORTHO05D003725 5.0e-19 97.1 54 77.8
CiPaw.08G156600 Carya illinoinensis HOM05D002981 ORTHO05D003725 6.6e-19 96.7 54 77.8
Nitab4.5_0000368g0270 Nicotiana tabacum HOM05D002981 ORTHO05D003725 6.6e-19 96.7 54 77.8
THA.LOC104802194 Tarenaya hassleriana HOM05D002981 ORTHO05D003725 6.6e-19 96.7 54 77.8
arahy.Tifrunner.gnm1.ann1.FDR7V2 Arachis hypogaea HOM05D002981 ORTHO05D003725 8.6e-19 96.3 54 77.8
MSTRG.5139 Avicennia marina HOM05D002981 ORTHO05D003725 8.6e-19 96.3 54 77.8
CsaV3_7G029820 Cucumis sativus L. HOM05D002981 ORTHO05D003725 8.6e-19 96.3 54 77.8
Lj1g0022270 Lotus japonicus HOM05D002981 ORTHO05D003725 8.6e-19 96.3 54 75.9
Manes.05G002000 Manihot esculenta HOM05D002981 ORTHO05D003725 8.6e-19 96.3 54 77.8
QL03p018289 Quercus lobata HOM05D002981 ORTHO05D003725 8.6e-19 96.3 54 75.9
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.1e-18 95.9 54 75.9
Duzib211G0560 Durio zibethinus HOM05D002981 ORTHO05D003725 1.1e-18 95.9 54 75.9
Glyma.10G014700 Glycine max HOM05D002981 ORTHO05D003725 1.1e-18 95.9 55 76.4
Lj9C217G8 Lonicera japonica HOM05D002981 ORTHO05D003725 1.1e-18 95.9 54 77.8
Atru.chr5.1047 Acer truncatum HOM05D002981 ORTHO05D003725 1.5e-18 95.5 54 75.9
Carub.0004s3019 Capsella rubella HOM05D002981 ORTHO05D003725 1.9e-18 95.1 54 74.1
Thhalv10001515m.g Eutrema salsugineum HOM05D002981 ORTHO05D003725 1.9e-18 95.1 54 74.1
PSO210G1046 Papaver somniferum HOM05D002981 ORTHO05D003725 1.9e-18 95.1 55 74.5
PSO761G0326 Papaver somniferum HOM05D002981 ORTHO05D003725 1.9e-18 95.1 55 74.5
Potri.002G198300 Populus trichocarpa HOM05D002981 ORTHO05D003725 1.9e-18 95.1 54 75.9
Sabra02G0159300 Salix brachista HOM05D002981 ORTHO05D003725 1.9e-18 95.1 54 75.9
ATR0706G068 Amborella trichopoda HOM05D002981 ORTHO05D003725 2.5e-18 94.7 54 75.9
Medtr1g087520 Medicago truncatula HOM05D002981 ORTHO05D003725 2.5e-18 94.7 54 74.1
Psat6g163280 Pisum sativum HOM05D002981 ORTHO05D003725 3.3e-18 94.4 54 74.1
DCAR_029360 Daucus carota HOM05D002981 ORTHO05D003725 4.3e-18 94.0 54 74.1
Potri.014G122800 Populus trichocarpa HOM05D002981 ORTHO05D003725 4.3e-18 94.0 54 74.1
VMungo1383G3526 Vigna mungo HOM05D002981 ORTHO05D003725 4.3e-18 94.0 54 75.9
Duzib138G0226 Durio zibethinus HOM05D002981 ORTHO05D003725 5.6e-18 93.6 54 74.1
Manes.09G175600 Manihot esculenta HOM05D002981 ORTHO05D003725 5.6e-18 93.6 54 74.1
AL4G47030 Arabidopsis lyrata HOM05D002981 ORTHO05D003725 7.3e-18 93.2 54 74.1
AT2G47470 Arabidopsis thaliana HOM05D002981 ORTHO05D003725 7.3e-18 93.2 54 74.1
MD12G1207400 Malus domestica HOM05D002981 ORTHO05D003725 7.3e-18 93.2 54 75.9
Sp4g29410 Schrenkiella parvula HOM05D002981 ORTHO05D003725 7.3e-18 93.2 54 74.1
BcaB02g08769 Brassica carinata HOM05D002981 ORTHO05D003725 9.5e-18 92.8 54 72.2
BolC4t21686H Brassica oleracea HOM05D002981 ORTHO05D003725 9.5e-18 92.8 54 72.2
Sabra14G0091200 Salix brachista HOM05D002981 ORTHO05D003725 9.5e-18 92.8 54 72.2
HPP92_016960 Vanilla planifolia HOM05D002981 ORTHO05D003725 9.5e-18 92.8 55 72.7
SEGI_15151 Sequoiadendron giganteum HOM05D002981 ORTHO05D003725 1.2e-17 92.4 54 72.2
CiPaw.07G115400 Carya illinoinensis HOM05D002981 ORTHO05D003725 1.6e-17 92.0 54 72.2
Lj5A337G17 Lonicera japonica HOM05D002981 ORTHO05D003725 1.6e-17 92.0 54 72.2
Cpa.g.sc18.9 Carica papaya HOM05D002981 ORTHO05D003725 2.8e-17 91.3 52 76.9
Haze_05013 Corylus avellana HOM05D002981 ORTHO05D003725 2.8e-17 91.3 54 74.1
DCAR_005415 Daucus carota HOM05D002981 ORTHO05D003725 2.8e-17 91.3 55 69.1
SHI12762 Sapria himalayana HOM05D002981 ORTHO05D003725 2.8e-17 91.3 54 74.1
C04p00410 Brassica napus HOM05D002981 ORTHO05D003725 3.6e-17 90.9 54 70.4
Ca_09297_v3 Cicer arietinum L. HOM05D002981 ORTHO05D003725 3.6e-17 90.9 54 74.1
Peaxi162Scf00071g00438 Petunia axillaris HOM05D002981 ORTHO05D003725 3.6e-17 90.9 54 70.4
A05p00460 Brassica napus HOM05D002981 ORTHO05D003725 4.7e-17 90.5 54 70.4
BraA05t19044Z Brassica rapa HOM05D002981 ORTHO05D003725 4.7e-17 90.5 54 70.4
TPR.G19768 Trifolium pratense HOM05D002981 ORTHO05D003725 4.7e-17 90.5 54 70.4
CSS0028783 Camellia sinensis var. sinensis HOM05D002981 ORTHO05D003725 6.2e-17 90.1 56 69.6
Gohir.D11G116000 Gossypium hirsutum HOM05D002981 ORTHO05D003725 6.2e-17 90.1 54 68.5
Gorai.007G124200 Gossypium raimondii HOM05D002981 ORTHO05D003725 6.2e-17 90.1 54 68.5
Sed0023511 Sechium edule HOM05D002981 ORTHO05D003725 6.2e-17 90.1 54 74.1
SGA_v2.0_scaffold80G25880 Striga asiatica HOM05D002981 ORTHO05D003725 6.2e-17 90.1 54 74.1
Medtr7g112040 Medicago truncatula HOM05D002981 ORTHO05D003725 8.1e-17 89.7 54 70.4
QL12p028974 Quercus lobata HOM05D002981 ORTHO05D003725 1.1e-16 89.4 54 72.2
Sc16g0008930 Simmondsia chinensis HOM05D002981 ORTHO05D003725 1.1e-16 89.4 54 70.4
TPR.G1663 Trifolium pratense HOM05D002981 ORTHO05D003725 1.1e-16 89.4 56 69.6
Hund21746 Selenicereus undatus HOM05D002981 ORTHO05D003725 1.4e-16 89.0 54 70.4
Gohir.A07G127500 Gossypium hirsutum HOM05D002981 ORTHO05D003725 1.8e-16 88.6 55 67.3
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 1.8e-16 88.6 55 67.3
Hund07135 Selenicereus undatus HOM05D002981 ORTHO05D003725 2.3e-16 88.2 54 68.5
Sc09g0002680 Simmondsia chinensis HOM05D002981 ORTHO05D003725 2.3e-16 88.2 54 68.5
Hma1.2p1_0472F.1_g159880 Hydrangea macrophylla HOM05D002981 ORTHO05D003725 5.2e-16 87.0 43 88.4
SGA_v2.0_scaffold81G26125 Striga asiatica HOM05D002981 ORTHO05D003725 5.2e-16 87.0 54 70.4
EL10Ac4g09830 Beta vulgaris HOM05D002981 ORTHO05D003725 6.8e-16 86.7 54 68.5
DCAR_025272 Daucus carota HOM05D002981 ORTHO05D003725 1.5e-15 85.5 55 65.5
ECA236G5052 Erigeron canadensis HOM05D002981 ORTHO05D003725 4.4e-15 84.0 54 66.7
Pp3c4_19910 Physcomitrium patens HOM05D002981 ORTHO05D003725 4.4e-15 84.0 51 66.7
AagrBONN_evm.TU.Sc2ySwM_228.808 Anthoceros agrestis HOM05D002981 ORTHO05D003725 9.8e-15 82.8 55 63.6
arahy.Tifrunner.gnm1.ann1.PTRY8R Arachis hypogaea HOM05D002981 ORTHO05D003725 1.3e-14 82.4 55 65.5
Mapoly0016s0144 Marchantia polymorpha HOM05D002981 ORTHO05D003725 1.1e-13 79.3 54 61.1
Lsat_1_v5_gn_7_73501 Lactuca sativa HOM05D002981 ORTHO05D003725 3.2e-13 77.8 52 61.5
HPP92_015959 Vanilla planifolia HOM05D002981 ORTHO05D003725 6.0e-12 73.6 47 61.7
Psat3g013080 Pisum sativum HOM05D002981 ORTHO05D003725 7.8e-12 73.2 54 59.3
SMO201G0065 Selaginella moellendorffii HOM05D002981 ORTHO05D003725 1.1e-10 69.3 63 50.8
CBR_g41277 Chara braunii HOM05D002981 ORTHO05D003725 1.9e-10 68.6 55 50.9
CBR_g41286 Chara braunii HOM05D002981 ORTHO05D003725 3.3e-10 67.8 55 50.9
CBR_g35008 Chara braunii HOM05D002981 ORTHO05D003725 9.5e-10 66.2 55 49.1
Lsat_1_v5_gn_9_98021 Lactuca sativa HOM05D002981 ORTHO05D003725 1.6e-09 65.5 42 61.9
Lalb_Chr06g0166781 Lupinus albus HOM05D002981 ORTHO05D003725 4.7e-09 63.9 37 70.3
Actinidia16850 Actinidia chinensis HOM05D002981 ORTHO05D003725 1.1e-08 62.8 48 60.4
Haze_04080 Corylus avellana HOM05D002981 ORTHO05D003725 2.3e-08 61.6 55 54.5
Cfa023759 Carpinus fangiana HOM05D002981 ORTHO05D003725 7.6e-07 56.6 55 43.6
C04p39530 Brassica napus HOM05D002981 ORTHO05D003725 8.4e-06 53.1 56 41.1
BolC4t25518H Brassica oleracea HOM05D002981 ORTHO05D003725 8.4e-06 53.1 56 41.1


User provided reference genes

Program Settings