Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 2.0e-127 459.1 232 100.0
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.2e-94 349.4 213 80.8
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.2e-94 349.4 213 80.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 230 75.7
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 3.1e-93 345.5 219 78.1
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 5.4e-93 344.7 215 79.1
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.0e-92 342.8 219 77.2
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 5.9e-92 341.3 215 77.7
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 5.9e-92 341.3 219 77.2
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.0e-91 340.5 219 78.1
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.3e-91 340.1 218 77.5
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.1e-90 337.0 223 74.4
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.3e-90 335.5 224 75.0
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 4.3e-90 335.1 216 75.0
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.5e-90 334.0 224 72.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 9.5e-90 334.0 224 72.8
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.2e-89 333.6 219 74.4
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 2.1e-89 332.8 214 76.2
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.1e-89 332.8 225 73.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.1e-89 332.8 219 73.5
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.8e-89 332.4 223 74.0
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 3.6e-89 332.0 224 74.1
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 4.7e-89 331.6 218 73.4
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 4.7e-89 331.6 224 72.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 8.0e-89 330.9 226 71.2
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 8.0e-89 330.9 219 73.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.0e-89 330.9 227 72.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.3e-88 329.3 223 73.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 2.3e-88 329.3 218 72.5
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.0e-88 328.9 217 73.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 3.0e-88 328.9 214 75.7
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 5.2e-88 328.2 214 73.8
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 5.2e-88 328.2 224 71.0
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 6.8e-88 327.8 230 70.0
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 6.8e-88 327.8 217 72.8
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 8.9e-88 327.4 224 71.4
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.2e-87 327.0 215 74.4
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-87 327.0 219 71.7
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.0e-87 326.2 218 71.6
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-87 326.2 223 72.2
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.0e-87 326.2 219 71.2
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-87 326.2 218 73.4
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.0e-87 326.2 217 72.4
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.6e-87 325.9 218 71.1
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 2.6e-87 325.9 215 73.0
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.6e-87 325.9 223 71.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 2.6e-87 325.9 217 70.5
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.6e-87 325.9 217 73.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 3.4e-87 325.5 219 72.1
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 4.4e-87 325.1 218 71.1
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 4.4e-87 325.1 222 69.8
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 4.4e-87 325.1 217 72.4
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 4.4e-87 325.1 217 71.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 4.4e-87 325.1 217 70.0
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 4.4e-87 325.1 221 72.9
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 5.7e-87 324.7 215 73.0
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.7e-87 324.7 219 72.1
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 9.8e-87 323.9 214 74.3
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.3e-86 323.6 218 72.9
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.3e-86 323.6 224 71.4
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.3e-86 323.6 224 71.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.3e-86 323.6 223 72.6
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 2.2e-86 322.8 218 69.7
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.9e-86 322.4 218 71.1
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 2.9e-86 322.4 217 71.4
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 6.4e-86 321.2 225 72.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 8.3e-86 320.9 221 71.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 8.3e-86 320.9 225 69.8
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.1e-85 320.5 222 70.3
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.4e-85 320.1 224 71.9
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.4e-85 319.3 221 69.7
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.4e-85 319.3 221 69.7
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 3.2e-85 318.9 227 69.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.2e-85 318.9 224 69.6
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 4.1e-85 318.5 224 70.1
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 5.4e-85 318.2 224 69.6
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 5.4e-85 318.2 225 69.3
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 7.0e-85 317.8 218 70.6
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.2e-84 317.0 224 70.1
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.2e-84 317.0 224 68.8
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.2e-84 317.0 219 72.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.6e-84 316.6 227 67.8
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.0e-84 316.2 224 69.2
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 3.5e-84 315.5 230 67.0
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 3.5e-84 315.5 228 68.9
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 7.8e-84 314.3 224 68.3
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.0e-83 313.9 224 68.3
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.0e-83 313.9 204 75.0
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.3e-83 313.5 221 70.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 3.0e-83 312.4 202 74.8
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.9e-83 312.0 236 66.9
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 3.9e-83 312.0 224 67.9
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 3.9e-83 312.0 224 69.2
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 6.6e-83 311.2 224 69.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 4.3e-82 308.5 224 69.6
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 4.3e-82 308.5 214 70.6
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 7.3e-82 307.8 222 70.7
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.8e-81 305.8 231 66.2
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 8.0e-81 304.3 216 68.1
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 3.1e-80 302.4 214 68.2
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.0e-80 302.0 201 72.1
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.2e-80 301.6 231 65.8
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 5.2e-80 301.6 214 71.0
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.5e-79 300.1 227 67.0
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.6e-79 299.3 205 70.7
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 3.4e-79 298.9 202 69.8
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 5.8e-79 298.1 217 68.7
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 5.8e-79 298.1 205 69.3
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.8e-79 297.4 231 64.1
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.7e-78 296.6 227 66.1
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 3.7e-78 295.4 200 71.0
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 6.4e-78 294.7 202 70.3
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.4e-77 293.5 203 67.5
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.9e-77 293.1 224 66.1
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 2.4e-77 292.7 208 69.2
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 2.4e-77 292.7 208 69.2
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 5.4e-77 291.6 200 69.5
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 9.2e-77 290.8 208 67.3
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 3.5e-76 288.9 224 66.1
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 1.3e-75 287.0 195 71.8
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.7e-75 286.6 259 59.1
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.9e-75 285.4 201 70.1
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 2.5e-74 282.7 242 59.5
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 5.6e-74 281.6 210 68.1
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 9.5e-74 280.8 218 63.8
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.7e-73 278.5 219 58.9
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.1e-72 277.3 198 67.7
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 4.0e-72 275.4 213 66.7
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.6e-71 272.7 213 64.3
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.7e-70 268.9 211 67.3
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 1.4e-69 266.9 194 68.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.4e-69 266.9 214 59.8
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 6.6e-67 258.1 232 59.5
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.9e-66 256.5 173 71.7
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 1.2e-65 253.8 222 60.8
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-65 253.4 210 62.9
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.8e-65 252.7 221 59.7
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 4.7e-65 251.9 215 61.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 3.4e-63 245.7 159 76.1
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 3.4e-63 245.7 196 64.3
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.4e-61 239.6 203 61.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 3.2e-61 239.2 218 55.5
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 6.0e-60 235.0 211 57.8
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.7e-59 231.1 229 58.5
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-58 229.9 157 70.7
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.5e-58 229.6 215 57.7
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 4.3e-58 228.8 206 58.3
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.2e-57 227.3 187 63.6
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.1e-57 226.5 218 56.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.6e-57 225.7 214 56.5
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.8e-56 223.4 214 53.7
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 6.4e-54 214.9 149 71.8
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 3.2e-53 212.6 211 53.1
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.3e-51 207.2 149 71.1
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.6e-49 199.1 224 51.8
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 3.0e-43 179.5 236 44.1
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 4.8e-41 172.2 249 42.2
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 3.2e-37 159.5 113 72.6
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 3.2e-37 159.5 174 54.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 5.5e-37 158.7 215 43.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 4.8e-33 145.6 94 74.5
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 9.0e-32 141.4 109 62.4
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.2e-31 141.0 102 65.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.0e-30 137.9 233 40.3
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 3.5e-28 129.4 115 62.6
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.7e-27 124.8 123 56.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.1e-26 124.4 173 42.2
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.6e-25 120.6 78 74.4
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 3.7e-17 92.8 76 56.6
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 4.5e-15 85.9 80 55.0
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 3.8e-14 82.8 203 31.5
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.7e-12 75.9 70 58.6
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.0e-10 70.5 105 41.9
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.2e-07 61.2 74 51.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.5e-07 59.3 40 55.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 2.2e-06 57.0 76 40.8


User provided reference genes

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