Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 0.0e+00 1290.8 672 100.0
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 4.3e-268 927.9 668 75.7
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.6e-267 926.0 672 75.3
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.6e-267 926.0 673 74.9
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.8e-267 925.2 673 74.9
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.4e-263 912.9 663 74.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 3.2e-263 911.8 674 74.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.6e-262 909.4 674 73.3
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.4e-260 900.6 675 71.4
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.8e-259 898.7 672 72.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.8e-259 898.7 663 73.3
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 6.2e-259 897.5 675 72.0
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.4e-257 891.7 676 73.1
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.1e-255 886.7 656 73.8
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-255 886.3 675 69.9
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.9e-255 885.9 624 77.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.2e-255 884.8 672 71.3
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.0e-253 880.2 702 66.0
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 3.0e-253 878.6 661 74.3
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 3.7e-251 871.7 637 74.3
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 6.2e-251 870.9 674 70.8
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-249 866.7 736 64.1
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.2e-249 866.7 793 63.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 3.4e-249 865.1 675 71.0
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 3.4e-249 865.1 675 71.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 3.4e-249 865.1 675 71.1
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.6e-249 864.0 676 70.3
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 8.4e-248 860.5 666 70.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.1e-247 860.1 697 68.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.1e-247 860.1 667 71.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.1e-246 855.9 669 69.1
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 4.6e-246 854.7 666 71.0
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.1e-244 850.1 677 68.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 4.3e-244 848.2 672 69.3
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 7.4e-244 847.4 674 69.1
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.8e-243 844.7 684 67.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 6.3e-243 844.3 632 71.7
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.2e-243 844.0 640 72.8
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 2.4e-242 842.4 664 70.3
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.4e-242 842.4 664 69.9
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 6.9e-242 840.9 674 68.8
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.4e-241 838.6 732 65.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 7.6e-241 837.4 680 68.8
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 2.2e-240 835.9 678 68.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 8.4e-240 833.9 678 68.9
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.2e-238 830.1 671 69.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.6e-238 828.6 677 67.1
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 6.1e-238 827.8 684 68.1
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 8.2e-235 817.4 608 73.0
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.4e-234 816.6 674 69.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.0e-232 810.4 673 66.9
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.3e-232 810.1 677 68.1
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 5.0e-232 808.1 672 68.8
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 7.2e-231 804.3 673 67.6
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 9.4e-231 803.9 670 67.9
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 3.6e-230 802.0 650 68.6
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 3.0e-229 798.9 678 63.1
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 4.8e-227 791.6 611 72.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 4.1e-226 788.5 697 65.7
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.5e-225 786.6 661 67.9
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.4e-223 777.3 661 66.1
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 7.9e-222 774.2 625 68.6
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.0e-221 773.9 668 64.5
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-221 773.1 640 66.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 8.2e-219 764.2 672 62.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.4e-215 750.7 602 69.6
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.2e-214 750.4 694 63.1
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 8.2e-211 737.6 671 65.6
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 9.1e-210 734.2 686 62.7
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.3e-208 730.3 682 64.2
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.7e-208 729.9 678 63.6
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 6.5e-208 728.0 677 64.1
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.9e-207 726.5 558 73.1
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.5e-207 726.1 542 74.4
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 9.4e-207 724.2 457 83.4
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.6e-206 723.4 560 72.5
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 3.0e-205 719.2 676 63.5
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 8.8e-205 717.6 683 62.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 5.7e-204 714.9 675 62.8
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 3.1e-202 709.1 677 58.8
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 9.1e-202 707.6 672 62.2
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 9.1e-202 707.6 671 63.0
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 3.5e-201 705.7 672 62.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 3.5e-201 705.7 672 62.1
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.3e-200 703.7 672 58.0
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 3.8e-200 702.2 680 62.4
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.5e-199 699.5 674 61.7
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.5e-199 699.5 674 61.7
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 3.0e-197 692.6 656 62.5
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 2.8e-195 686.0 495 77.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.7e-195 685.6 677 60.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.7e-195 685.6 677 60.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.1e-191 674.1 525 71.2
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.8e-186 656.8 602 59.1
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-185 654.1 691 56.9
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 5.0e-184 648.7 633 61.9
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 1.5e-183 647.1 674 57.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.1e-182 643.3 612 57.7
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.2e-179 633.3 673 57.7
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-173 614.4 616 56.8
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 4.9e-171 605.5 672 53.6
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.6e-169 600.5 611 59.4
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 7.3e-167 591.7 683 54.5
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.4e-164 582.8 720 48.5
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.6e-159 564.7 412 74.5
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.8e-158 563.1 468 64.1
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 3.1e-149 533.1 660 51.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.1e-141 506.5 442 66.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 3.8e-131 473.0 679 45.5
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.6e-126 457.6 576 48.1
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.5e-124 451.1 504 56.3
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 3.4e-124 449.9 635 46.0
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.6e-121 441.0 312 82.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.3e-115 421.4 553 47.4
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.3e-107 394.8 676 41.1
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.3e-104 384.0 284 79.6
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 7.0e-101 372.5 566 44.3
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 8.3e-78 295.8 311 60.1
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.3e-74 282.7 297 54.5
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-67 261.9 179 86.6
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.2e-60 238.8 299 56.2
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 7.8e-60 236.1 226 69.5
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.1e-58 232.3 332 39.5
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 2.5e-58 231.1 320 44.7
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.1e-57 226.1 298 52.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.9e-54 217.6 274 52.2
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.3e-54 216.1 200 55.5
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.6e-51 206.1 200 73.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.1e-48 199.1 284 38.4
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.5e-47 195.3 136 75.7
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.3e-42 177.6 103 93.2
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.6e-33 148.7 166 45.8
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.6e-33 148.7 222 39.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.1e-32 146.0 83 79.5
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 8.4e-30 136.3 250 36.8
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.0e-24 117.5 116 56.9
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 6.7e-19 100.1 59 76.3
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.5e-18 99.0 324 26.9
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 4.3e-18 97.4 102 55.9
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.4e-16 91.7 63 65.1
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.5e-15 89.0 51 86.3
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 4.9e-14 84.0 91 45.1
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 4.9e-14 84.0 91 45.1
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.5e-12 77.8 110 38.2
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.5e-10 71.6 115 40.0
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.5e-10 71.6 53 58.5
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 2.2e-09 68.6 65 53.8
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 1.1e-08 66.2 171 27.5
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-07 62.4 73 47.9
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-06 58.9 50 62.0
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 8.5e-06 56.6 35 62.9


User provided reference genes

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