Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.0e-228 796.6 452 100.0
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.6e-51 205.7 459 35.3
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 2.2e-42 177.6 481 34.7
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 5.1e-39 166.4 463 34.6
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 5.1e-39 166.4 466 34.3
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.9e-38 164.5 487 31.4
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 8.1e-37 159.1 473 32.1
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 9.0e-36 155.6 471 32.9
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.6e-35 154.1 487 32.2
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 4.5e-35 153.3 461 33.0
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 5.8e-35 152.9 472 33.7
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 6.4e-34 149.4 462 31.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 8.4e-34 149.1 333 35.4
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 4.6e-32 143.3 368 32.6
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 6.7e-31 139.4 471 31.4
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 2.8e-29 134.0 490 30.6
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 3.1e-28 130.6 489 29.4
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 5.3e-28 129.8 436 32.3
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 6.9e-28 129.4 458 29.9
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 2.6e-27 127.5 442 29.6
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.4e-27 127.1 510 29.6
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.3e-26 125.2 467 30.8
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 4.9e-26 123.2 496 29.4
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 6.5e-26 122.9 479 29.6
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.1e-25 122.1 442 28.1
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 4.2e-25 120.2 444 28.6
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.2e-24 118.6 522 29.3
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 4.6e-24 116.7 188 39.4
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 4.6e-24 116.7 474 30.4
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 6.1e-24 116.3 461 29.1
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 7.9e-24 115.9 485 29.9
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.0e-23 115.5 487 29.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 3.9e-23 113.6 483 31.3
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.9e-23 113.6 442 28.5
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 8.7e-23 112.5 491 30.3
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 1.1e-22 112.1 462 29.0
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.9e-22 111.3 471 29.1
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 2.5e-22 110.9 453 29.8
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 3.3e-22 110.5 453 30.7
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.7e-22 109.8 191 46.6
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 8.2e-21 105.9 471 27.0
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.1e-20 105.5 452 35.2
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.8e-20 104.8 505 33.1
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.4e-20 104.4 460 27.6
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.1e-20 104.0 463 28.3
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 4.1e-20 103.6 512 30.5
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 4.1e-20 103.6 448 29.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.1e-20 103.6 448 29.9
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 5.3e-20 103.2 378 30.7
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 5.3e-20 103.2 449 28.1
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 9.0e-20 102.4 450 32.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 9.0e-20 102.4 498 28.5
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.0e-19 101.3 449 28.5
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.7e-19 99.4 486 27.4
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.0e-18 99.0 503 28.6
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 2.9e-18 97.4 432 28.9
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.5e-17 94.4 449 30.5
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 2.5e-17 94.4 460 31.7
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 3.2e-17 94.0 443 26.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.2e-17 94.0 459 27.5
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 4.2e-17 93.6 448 27.2
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.2e-16 92.0 450 26.7
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.2e-16 92.0 453 29.1
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-16 92.0 437 26.5
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 1.6e-16 91.7 302 32.5
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.0e-15 89.0 444 27.0
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.3e-15 87.8 450 30.7
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.0e-15 87.4 464 25.2
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.9e-15 87.0 440 28.2
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 6.7e-15 86.3 459 31.2
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.1e-14 85.5 452 28.8
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-14 85.5 437 27.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 1.1e-14 85.5 437 27.9
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.5e-14 85.1 443 29.1
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 2.0e-14 84.7 483 28.6
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.5e-14 84.3 296 29.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 7.4e-14 82.8 448 27.5
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 9.7e-14 82.4 452 27.7
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.3e-13 82.0 439 28.0
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.7e-13 81.6 446 28.3
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.7e-13 81.6 496 24.4
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 3.7e-13 80.5 466 29.2
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 4.8e-13 80.1 464 26.1
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 6.3e-13 79.7 454 27.1
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 6.3e-13 79.7 470 28.1
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 8.2e-13 79.3 441 27.0
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 8.2e-13 79.3 457 32.8
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-12 78.6 402 27.6
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 1.4e-12 78.6 402 27.6
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 1.4e-12 78.6 167 35.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 3.1e-12 77.4 443 28.7
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 3.1e-12 77.4 448 27.2
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 3.1e-12 77.4 440 28.0
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-12 77.0 447 26.4
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 4.1e-12 77.0 447 26.4
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 4.1e-12 77.0 290 28.6
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.1e-12 77.0 461 32.1
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 5.3e-12 76.6 450 27.1
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 6.9e-12 76.3 458 27.9
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.0e-11 74.7 167 35.9
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 2.6e-11 74.3 453 26.5
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 2.6e-11 74.3 484 28.3
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 2.6e-11 74.3 438 26.5
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 3.4e-11 73.9 435 25.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 5.9e-11 73.2 167 31.7
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.0e-10 72.4 370 26.2
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.3e-10 72.0 447 28.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 2.9e-10 70.9 428 24.8
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 3.8e-10 70.5 440 26.8
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 3.8e-10 70.5 145 35.2
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 5.0e-10 70.1 472 26.7
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 5.0e-10 70.1 444 27.7
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 8.5e-10 69.3 450 25.6
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 8.5e-10 69.3 429 25.6
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.1e-09 68.9 428 24.3
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.1e-09 68.9 179 31.3
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-09 68.2 168 31.0
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 2.5e-09 67.8 441 27.0
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.2e-09 67.0 213 28.2
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.2e-09 67.0 194 29.9
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 4.2e-09 67.0 434 27.2
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 5.5e-09 66.6 477 24.1
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 7.2e-09 66.2 192 30.7
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 9.4e-09 65.9 216 29.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 9.4e-09 65.9 193 29.5
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 4.7e-08 63.5 61 52.5
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 1.4e-07 62.0 435 23.0
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-07 61.6 299 26.8
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-07 61.6 172 29.1
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 1.8e-07 61.6 192 32.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 3.0e-07 60.8 182 31.3
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 5.1e-07 60.1 57 50.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 8.8e-07 59.3 176 28.4
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 8.8e-07 59.3 176 28.4
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-06 58.9 178 29.8
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.5e-06 58.5 176 28.4
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-06 58.5 187 27.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.0e-06 58.2 190 27.9
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.0e-06 58.2 64 51.6
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.3e-06 57.4 64 45.3
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 4.4e-06 57.0 177 27.1
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 9.7e-06 55.8 187 29.9


User provided reference genes

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