Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.6e-264 915.6 474 100.0
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 1.7e-170 603.2 441 69.2
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.4e-169 600.1 467 66.8
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 3.9e-167 592.0 459 66.7
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 8.2e-165 584.3 455 65.5
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.2e-163 580.5 423 67.1
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.7e-162 576.6 456 63.4
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 2.9e-162 575.9 422 67.1
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.9e-162 575.9 466 62.0
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 2.3e-159 566.2 420 67.4
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 5.2e-159 565.1 458 63.1
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 4.4e-158 562.0 465 61.7
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.3e-157 560.5 465 61.7
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.2e-157 559.7 465 61.5
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 2.7e-155 552.7 451 62.5
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 7.7e-155 551.2 437 64.3
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.3e-154 550.4 423 65.0
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 1.3e-154 550.4 453 61.1
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 5.0e-154 548.5 456 63.8
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.9e-153 546.6 421 65.3
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 6.1e-152 541.6 460 59.8
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 6.1e-152 541.6 460 59.8
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.8e-151 540.0 421 63.4
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 9.8e-150 534.3 421 62.7
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.7e-149 533.5 415 64.6
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 2.2e-149 533.1 431 61.3
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.1e-148 530.8 421 62.7
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 7.7e-147 524.6 421 62.2
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.1e-145 520.8 527 55.2
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 4.2e-145 518.8 423 62.2
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 9.5e-145 517.7 457 58.9
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 6.1e-144 515.0 432 60.9
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.4e-143 513.8 458 57.6
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.2e-142 510.8 441 60.3
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 2.2e-141 506.5 429 62.7
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 2.4e-140 503.1 557 51.3
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.7e-139 499.6 461 57.7
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 7.8e-139 498.0 528 53.2
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 2.9e-138 496.1 426 59.2
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 3.8e-138 495.7 442 57.0
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 1.4e-135 487.3 605 47.1
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 6.8e-135 485.0 460 56.1
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 5.7e-134 481.9 420 58.3
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 2.2e-133 479.9 608 46.7
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.7e-130 470.3 460 55.9
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.7e-122 443.7 441 53.5
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.9e-121 440.3 330 66.7
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 3.6e-120 436.0 391 57.8
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 3.9e-114 416.0 439 49.2
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 5.1e-114 415.6 414 51.9
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 3.8e-109 399.4 330 59.7
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.9e-108 397.1 334 59.3
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 1.9e-108 397.1 329 60.5
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.6e-99 367.5 419 48.2
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 4.3e-97 359.4 347 53.3
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 7.6e-94 348.6 293 59.4
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.4e-92 343.6 268 63.8
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 1.4e-87 327.8 290 57.6
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 3.3e-81 306.6 352 50.3
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.8e-79 300.8 463 39.5
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 4.8e-72 276.2 219 63.9
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 6.1e-67 259.2 459 35.3
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 8.5e-61 238.8 436 35.6
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 5.7e-49 199.5 185 56.8
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.7e-40 171.4 180 47.8
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 2.0e-38 164.5 131 60.3
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 1.3e-37 161.8 134 55.2
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 7.2e-36 156.0 104 71.2
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 2.3e-29 134.4 115 60.0
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 7.5e-25 119.4 115 57.4
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 7.0e-23 112.8 78 67.9
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 1.3e-21 108.6 106 55.7
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.7e-21 108.2 97 60.8
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 2.9e-21 107.5 168 44.0
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 5.8e-17 93.2 62 74.2
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 9.8e-17 92.4 240 31.2
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.1e-15 89.0 233 30.0
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.1e-15 89.0 63 61.9
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.1e-15 89.0 63 61.9
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.6e-14 85.1 76 52.6
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.8e-14 82.8 240 27.9
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 7.8e-14 82.8 240 27.9
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.3e-13 82.0 245 27.3
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.3e-12 77.0 309 25.2
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 9.5e-12 75.9 97 41.2
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 2.8e-11 74.3 224 29.0
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.7e-11 73.6 234 25.6
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 6.2e-11 73.2 204 29.4
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.0e-09 68.2 233 24.5
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 2.6e-09 67.8 57 56.1
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 2.6e-09 67.8 265 25.3
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 5.8e-09 66.6 217 27.2
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.7e-08 65.1 232 27.2
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 4.9e-08 63.5 235 25.5
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 4.9e-08 63.5 252 27.0
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 4.9e-08 63.5 236 25.4
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.9e-08 63.5 39 66.7
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 8.3e-08 62.8 240 23.3
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.1e-07 62.4 248 24.2
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 1.1e-07 62.4 240 25.4
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.9e-07 61.6 273 25.6
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 2.4e-07 61.2 263 24.7
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 2.4e-07 61.2 264 25.0
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 3.2e-07 60.8 258 24.8
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 3.2e-07 60.8 266 27.1
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 3.2e-07 60.8 294 25.2
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 5.4e-07 60.1 319 23.2
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 5.4e-07 60.1 228 25.0
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 5.4e-07 60.1 269 26.0
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 7.0e-07 59.7 188 26.1
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 9.2e-07 59.3 210 27.1
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 1.2e-06 58.9 188 27.1
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.2e-06 58.9 293 22.2
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.2e-06 58.9 249 22.9
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 1.6e-06 58.5 328 22.9
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.6e-06 58.5 252 25.0
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 2.1e-06 58.2 203 27.1
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 2.7e-06 57.8 225 23.6
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 2.7e-06 57.8 252 24.2
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 2.7e-06 57.8 238 23.5
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.7e-06 57.8 237 25.3
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.5e-06 57.4 197 27.9
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 3.5e-06 57.4 188 25.5
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 3.5e-06 57.4 242 24.0
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 4.6e-06 57.0 198 26.8
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 4.6e-06 57.0 213 25.4
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 4.6e-06 57.0 202 26.7
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.0e-06 56.6 304 22.4
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.0e-06 56.6 304 21.7
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 7.8e-06 56.2 244 22.5
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 7.8e-06 56.2 177 27.1
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 7.8e-06 56.2 215 23.7


User provided reference genes

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