Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06860 Coffea canephora HOM05D018220 ORTHO05D015223 4.4e-42 175.6 148 100.0
Cc09_g06850 Coffea canephora HOM05D000021 ORTHO05D152980 3.3e-21 106.3 59 89.8
Cc00_g32900 Coffea canephora HOM05D018220 ORTHO05D025129 1.0e-11 74.7 71 56.3
Cc09_g06880 Coffea canephora HOM05D018220 ORTHO05D153793 1.8e-11 73.9 71 54.9
Cc00_g30990 Coffea canephora HOM05D018220 ORTHO05D154426 3.1e-11 73.2 71 56.3
Cc00_g28070 Coffea canephora HOM05D000021 ORTHO05D000010 2.6e-10 70.1 41 82.9
Cc09_g06870 Coffea canephora HOM05D000021 ORTHO05D000010 7.5e-10 68.6 67 52.2
Cc09_g06900 Coffea canephora HOM05D000021 ORTHO05D000010 4.1e-08 62.8 70 51.4
Cc07_g07620 Coffea canephora HOM05D018220 ORTHO05D154497 5.4e-08 62.4 60 58.3
Cc00_g24410 Coffea canephora HOM05D000021 ORTHO05D000010 9.2e-08 61.6 59 59.3
Cc09_g06840 Coffea canephora HOM05D018220 ORTHO05D025129 1.2e-07 61.2 69 50.7
RcHm_v2.0_Chr5g0011351 Rosa chinensis HOM05D000021 ORTHO05D000010 1.6e-07 60.8 59 55.9
TPR.G29278 Trifolium pratense HOM05D020225 ORTHO05D015223 1.6e-07 60.8 71 46.5
RcHm_v2.0_Chr7g0213311 Rosa chinensis HOM05D018904 ORTHO05D016947 4.6e-07 59.3 57 45.6
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 1.3e-06 57.8 55 58.2
MD07G1236500 Malus domestica HOM05D000021 ORTHO05D000010 1.3e-06 57.8 57 47.4
CAN.G404.29 Capsicum annuum HOM05D000021 ORTHO05D000010 1.7e-06 57.4 55 54.5
RcHm_v2.0_Chr5g0059161 Rosa chinensis HOM05D000021 ORTHO05D000010 1.7e-06 57.4 59 54.2
Oeu057329.1 Olea europaea HOM05D000021 ORTHO05D000010 5.0e-06 55.8 54 48.1
SalBow7G2693 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.0e-06 55.8 59 54.2
Lj4C562G4 Lonicera japonica HOM05D000021 ORTHO05D000010 8.6e-06 55.1 65 44.6
Lj7C151G1 Lonicera japonica HOM05D000021 ORTHO05D016971 8.6e-06 55.1 65 44.6


User provided reference genes

Program Settings