Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06840 Coffea canephora HOM05D018220 ORTHO05D025129 1.1e-165 587.4 540 100.0
Cc09_g06870 Coffea canephora HOM05D000021 ORTHO05D000010 6.3e-28 129.8 255 47.5
Cc00_g32900 Coffea canephora HOM05D018220 ORTHO05D025129 4.2e-24 117.1 183 63.9
Cc00_g15340 Coffea canephora HOM05D020204 ORTHO05D000010 1.5e-21 108.6 165 47.3
Cc09_g06850 Coffea canephora HOM05D000021 ORTHO05D152980 5.5e-16 90.1 209 56.9
Cc00_g32710 Coffea canephora HOM05D020204 ORTHO05D025129 1.8e-14 85.1 209 36.4
PGSC0003DMG400028473 Solanum tuberosum HOM05D000021 ORTHO05D000010 6.3e-12 76.6 99 36.4
Cc00_g34960 Coffea canephora HOM05D018220 ORTHO05D025129 8.3e-12 76.3 64 82.8
CAN.G189.3 Capsicum annuum HOM05D000021 ORTHO05D000010 2.4e-11 74.7 205 44.9
CAN.G824.12 Capsicum annuum HOM05D000021 ORTHO05D000010 9.2e-11 72.8 147 37.4
CiPaw.10G101700 Carya illinoinensis HOM05D000021 ORTHO05D000010 9.2e-11 72.8 201 49.3
Cc09_g06900 Coffea canephora HOM05D000021 ORTHO05D000010 9.2e-11 72.8 222 44.1
RcHm_v2.0_Chr6g0254081 Rosa chinensis HOM05D001506 ORTHO05D000455 9.2e-11 72.8 116 33.6
CAN.G904.39 Capsicum annuum HOM05D000021 ORTHO05D000010 2.7e-10 71.2 207 45.4
CAN.G1505.7 Capsicum annuum HOM05D000021 ORTHO05D000010 3.5e-10 70.9 147 36.1
Cc09_g06880 Coffea canephora HOM05D018220 ORTHO05D153793 3.5e-10 70.9 183 56.3
Cc10_g14950 Coffea canephora HOM05D000021 ORTHO05D000010 3.5e-10 70.9 149 49.7
CiPaw.10G099500 Carya illinoinensis HOM05D000021 ORTHO05D000010 7.8e-10 69.7 147 36.7
CSS0014128 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 1.0e-09 69.3 201 33.8
Cc00_g26830 Coffea canephora HOM05D000021 ORTHO05D000010 1.3e-09 68.9 123 39.8
TAR383G0373 Trochodendron aralioides HOM05D000021 ORTHO05D000010 1.7e-09 68.6 74 44.6
CAN.G1267.1 Capsicum annuum HOM05D016353 ORTHO05D017748 2.3e-09 68.2 99 38.4
Nitab4.5_0007729g0030 Nicotiana tabacum HOM05D014506 ORTHO05D017765 5.0e-09 67.0 82 36.6
Cc05_g00270 Coffea canephora HOM05D000021 ORTHO05D000010 8.6e-09 66.2 147 40.1
CAN.G404.18 Capsicum annuum HOM05D000021 ORTHO05D000010 1.1e-08 65.9 147 38.8
Ciclev10006830m.g Citrus clementina HOM05D000021 ORTHO05D000010 1.1e-08 65.9 133 45.9
Nitab4.5_0000005g0260 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.1e-08 65.9 200 45.0
TPR.G4471 Trifolium pratense HOM05D000071 ORTHO05D000029 1.5e-08 65.5 81 42.0
VMungo1215G2225 Vigna mungo HOM05D000021 ORTHO05D000010 1.5e-08 65.5 110 35.5
Nitab4.5_0001288g0110 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.9e-08 65.1 203 34.0
Cc00_g30990 Coffea canephora HOM05D018220 ORTHO05D154426 2.5e-08 64.7 75 85.3
CAN.G647.12 Capsicum annuum HOM05D000021 ORTHO05D000010 3.3e-08 64.3 191 41.4
Ciclev10033466m.g Citrus clementina HOM05D000021 ORTHO05D000010 4.3e-08 63.9 199 41.2
Haze_23094 Corylus avellana HOM05D001506 ORTHO05D000455 5.6e-08 63.5 177 27.7
CAN.G189.68 Capsicum annuum HOM05D000021 ORTHO05D000010 7.3e-08 63.2 200 27.0
MD00G1077400 Malus domestica HOM05D001506 ORTHO05D000455 7.3e-08 63.2 175 29.1
TPR.G19471 Trifolium pratense HOM05D000021 ORTHO05D000010 7.3e-08 63.2 120 31.7
Migut.H01444 Erythranthe guttata HOM05D000021 ORTHO05D000010 9.5e-08 62.8 148 46.6
Prupe.6G116800 Prunus persica HOM05D001506 ORTHO05D000455 9.5e-08 62.8 177 28.2
RcHm_v2.0_Chr5g0082581 Rosa chinensis HOM05D001506 ORTHO05D000455 9.5e-08 62.8 116 31.9
CAN.G783.13 Capsicum annuum HOM05D000002 ORTHO05D000010 1.6e-07 62.0 198 40.9
Cc02_g16030 Coffea canephora HOM05D000021 ORTHO05D000010 1.6e-07 62.0 76 38.2
FAN17G1113 Fragaria x ananassa HOM05D001506 ORTHO05D000455 1.6e-07 62.0 94 31.9
BcaC08g46685 Brassica carinata HOM05D000094 ORTHO05D000455 2.1e-07 61.6 177 35.0
C06p46650 Brassica napus HOM05D000094 ORTHO05D000455 2.1e-07 61.6 177 35.0
BolC6t39710H Brassica oleracea HOM05D000094 ORTHO05D000455 2.1e-07 61.6 177 35.0
arahy.Tifrunner.gnm1.ann1.UY3KLE Arachis hypogaea HOM05D000071 ORTHO05D000029 2.8e-07 61.2 91 40.7
Glyma.09G217200 Glycine max HOM05D000021 ORTHO05D000010 2.8e-07 61.2 120 34.2
A07p38470 Brassica napus HOM05D001506 ORTHO05D000455 3.6e-07 60.8 97 37.1
CAN.G189.5 Capsicum annuum HOM05D000021 ORTHO05D000010 3.6e-07 60.8 147 32.7
Ciclev10007091m.g Citrus clementina HOM05D000021 ORTHO05D000010 3.6e-07 60.8 140 35.0
Cc09_g06860 Coffea canephora HOM05D018220 ORTHO05D015223 3.6e-07 60.8 69 50.7
Cc00_g26510 Coffea canephora HOM05D000021 ORTHO05D000010 4.7e-07 60.5 60 43.3
Duzib089G0001 Durio zibethinus HOM05D000053 ORTHO05D000035 4.7e-07 60.5 156 31.4
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 4.7e-07 60.5 196 28.6
Nitab4.5_0001584g0030 Nicotiana tabacum HOM05D000021 ORTHO05D017748 4.7e-07 60.5 57 50.9
Sabra11G0051200 Salix brachista HOM05D000021 ORTHO05D000010 4.7e-07 60.5 148 42.6
BraA07t31407Z Brassica rapa HOM05D000094 ORTHO05D000455 6.1e-07 60.1 97 36.1
Cc02_g15280 Coffea canephora HOM05D000021 ORTHO05D000010 6.1e-07 60.1 232 44.8
Cc11_g07840 Coffea canephora HOM05D000021 ORTHO05D000010 6.1e-07 60.1 143 44.1
arahy.Tifrunner.gnm1.ann1.F5TB6F Arachis hypogaea HOM05D000072 ORTHO05D000026 8.0e-07 59.7 140 31.4
arahy.Tifrunner.gnm1.ann1.KQ7W38 Arachis hypogaea HOM05D000072 ORTHO05D000026 8.0e-07 59.7 140 31.4
CAN.G638.10 Capsicum annuum HOM05D000021 ORTHO05D000010 8.0e-07 59.7 147 36.1
CAN.G866.8 Capsicum annuum HOM05D000002 ORTHO05D000010 8.0e-07 59.7 200 47.5
Cc09_g06830 Coffea canephora HOM05D000021 ORTHO05D000010 8.0e-07 59.7 53 50.9
RcHm_v2.0_Chr2g0114241 Rosa chinensis HOM05D000021 ORTHO05D000010 8.0e-07 59.7 74 37.8
AUR62011988 Chenopodium quinoa HOM05D000592 ORTHO05D001485 1.0e-06 59.3 171 29.2
PGSC0003DMG400026749 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.0e-06 59.3 115 40.9
CAN.G866.1 Capsicum annuum HOM05D000021 ORTHO05D000010 1.4e-06 58.9 63 39.7
AUR62015956 Chenopodium quinoa HOM05D000071 ORTHO05D000029 1.4e-06 58.9 105 31.4
Gohir.A01G049266 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.4e-06 58.9 90 34.4
MD10G1277600 Malus domestica HOM05D000021 ORTHO05D000010 1.4e-06 58.9 72 34.7
PGSC0003DMG400023643 Solanum tuberosum HOM05D000021 ORTHO05D000010 1.4e-06 58.9 143 43.4
TWI73G1121 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.4e-06 58.9 114 41.2
BcaB03g14977 Brassica carinata HOM05D000094 ORTHO05D000455 1.8e-06 58.5 177 35.0
CAN.G866.20 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-06 58.5 196 45.9
CiPaw.10G102100 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.8e-06 58.5 142 43.0
Nn1g08608 Nelumbo nucifera HOM05D000021 ORTHO05D000010 1.8e-06 58.5 140 41.4
SalBow6G2349 Salvia bowleyana HOM05D000021 ORTHO05D000010 1.8e-06 58.5 147 36.1
CANSAT01G0527 Cannabis sativa HOM05D000071 ORTHO05D000029 2.3e-06 58.2 77 39.0
CAN.G189.7 Capsicum annuum HOM05D000021 ORTHO05D000010 2.3e-06 58.2 149 35.6
CiPaw.10G101200 Carya illinoinensis HOM05D000021 ORTHO05D000010 2.3e-06 58.2 132 46.2
Migut.H01425 Erythranthe guttata HOM05D000021 ORTHO05D000010 2.3e-06 58.2 144 37.5
RcHm_v2.0_Chr2g0113871 Rosa chinensis HOM05D000021 ORTHO05D000010 2.3e-06 58.2 191 26.7
Thecc.07G113900 Theobroma cacao HOM05D000053 ORTHO05D000035 2.3e-06 58.2 169 30.2
CAN.G189.1 Capsicum annuum HOM05D000021 ORTHO05D000010 3.1e-06 57.8 145 37.9
CiPaw.10G105000 Carya illinoinensis HOM05D000021 ORTHO05D000010 3.1e-06 57.8 222 31.1
GSVIVG01029712001 Vitis vinifera HOM05D000053 ORTHO05D000035 3.1e-06 57.8 113 30.1
CAN.G189.25 Capsicum annuum HOM05D000021 ORTHO05D000010 4.0e-06 57.4 147 34.0
CAN.G783.16 Capsicum annuum HOM05D000021 ORTHO05D000010 4.0e-06 57.4 96 65.6
CiPaw.01G038600 Carya illinoinensis HOM05D000021 ORTHO05D000010 4.0e-06 57.4 142 32.4
CiPaw.01G039300 Carya illinoinensis HOM05D000021 ORTHO05D000010 4.0e-06 57.4 143 37.8
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 4.0e-06 57.4 196 28.1
Medtr6g040230 Medicago truncatula HOM05D001327 ORTHO05D002270 4.0e-06 57.4 197 34.0
Sabra11G0049400 Salix brachista HOM05D000021 ORTHO05D000010 4.0e-06 57.4 148 41.2
COL.COLO4_11857 Corchorus olitorius HOM05D000311 ORTHO05D000183 5.2e-06 57.0 173 32.4
Migut.G01323 Erythranthe guttata HOM05D000021 ORTHO05D000010 5.2e-06 57.0 147 44.9
PGSC0003DMG400026231 Solanum tuberosum HOM05D000053 ORTHO05D000035 5.2e-06 57.0 121 30.6
CAN.G525.70 Capsicum annuum HOM05D000021 ORTHO05D000010 6.8e-06 56.6 142 47.9
Cc00_g32540 Coffea canephora HOM05D000021 ORTHO05D000010 6.8e-06 56.6 188 45.7
Migut.G01178 Erythranthe guttata HOM05D000021 ORTHO05D000010 6.8e-06 56.6 142 44.4
Gohir.D10G038300 Gossypium hirsutum HOM05D025168 ORTHO05D017485 6.8e-06 56.6 64 40.6
Pp3c14_15390 Physcomitrium patens HOM05D000094 ORTHO05D001056 6.8e-06 56.6 78 34.6
RcHm_v2.0_Chr5g0082221 Rosa chinensis HOM05D001506 ORTHO05D000455 6.8e-06 56.6 115 29.6
SalBow1G6716 Salvia bowleyana HOM05D000021 ORTHO05D000010 6.8e-06 56.6 151 33.1
CAN.G801.25 Capsicum annuum HOM05D000021 ORTHO05D000010 8.9e-06 56.2 147 35.4
CDE04G2469 Ceratophyllum demersum HOM05D000029 ORTHO05D011302 8.9e-06 56.2 114 35.1
FAN26G0622 Fragaria x ananassa HOM05D000021 ORTHO05D025129 8.9e-06 56.2 88 35.2
Hma1.2p1_1011F.1_g247590 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 8.9e-06 56.2 115 30.4
Medtr2g016580 Medicago truncatula HOM05D000021 ORTHO05D000010 8.9e-06 56.2 195 41.0
Potri.011G068500 Populus trichocarpa HOM05D000021 ORTHO05D000010 8.9e-06 56.2 149 41.6
TPR.G17278 Trifolium pratense HOM05D000021 ORTHO05D000010 8.9e-06 56.2 106 32.1


User provided reference genes

Program Settings