Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 6.4e-16 86.3 43 100.0
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-14 80.9 42 90.5
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 2.5e-12 74.3 42 83.3
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 7.3e-12 72.8 42 81.0
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-11 72.0 43 81.4
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.8e-11 70.9 42 81.0
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.4e-10 68.6 42 73.8
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-09 64.7 42 69.0
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 3.4e-09 63.9 42 71.4
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 9.9e-09 62.4 42 69.0
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.7e-08 61.6 42 66.7
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.9e-08 60.8 42 66.7
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.7e-08 60.5 42 66.7
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.7e-08 60.5 42 61.9
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 3.7e-08 60.5 42 66.7
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.7e-08 60.5 42 66.7
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 3.7e-08 60.5 42 66.7
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.9e-08 60.1 42 61.9
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 4.9e-08 60.1 42 64.3
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.4e-08 59.7 42 66.7
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 8.4e-08 59.3 42 66.7
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 8.4e-08 59.3 42 66.7
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 8.4e-08 59.3 42 64.3
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.1e-07 58.9 42 66.7
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.1e-07 58.9 40 65.0
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-07 58.5 42 61.9
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-07 58.5 37 70.3
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 1.9e-07 58.2 42 64.3
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.9e-07 58.2 42 61.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.9e-07 58.2 42 61.9
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.9e-07 58.2 42 59.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 2.4e-07 57.8 41 65.9
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.4e-07 57.8 42 59.5
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 2.4e-07 57.8 42 61.9
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.4e-07 57.8 38 68.4
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.4e-07 57.8 38 68.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 3.2e-07 57.4 38 68.4
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 3.2e-07 57.4 38 68.4
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 3.2e-07 57.4 38 68.4
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 59.5
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.2e-07 57.4 36 69.4
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 64.3
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 61.9
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 64.3
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 64.3
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 64.3
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-07 57.4 42 64.3
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 4.1e-07 57.0 38 68.4
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 4.1e-07 57.0 42 61.9
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.1e-07 57.0 42 59.5
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.1e-07 57.0 42 61.9
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.1e-07 57.0 42 64.3
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 4.1e-07 57.0 42 59.5
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 5.4e-07 56.6 42 57.1
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.4e-07 56.6 36 72.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 5.4e-07 56.6 42 64.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 5.4e-07 56.6 42 66.7
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 5.4e-07 56.6 42 59.5
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 7.1e-07 56.2 36 72.2
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 7.1e-07 56.2 36 72.2
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.1e-07 56.2 42 61.9
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 7.1e-07 56.2 42 64.3
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 7.1e-07 56.2 42 64.3
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 7.1e-07 56.2 36 69.4
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.2e-07 55.8 42 59.5
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.2e-07 55.8 42 59.5
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 9.2e-07 55.8 42 61.9
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-06 55.5 42 61.9
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.2e-06 55.5 36 69.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-06 55.1 42 59.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.1e-06 54.7 42 61.9
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.1e-06 54.7 42 59.5
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.7e-06 54.3 42 57.1
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.7e-06 54.3 42 61.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.7e-06 54.3 43 62.8
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.7e-06 54.3 43 62.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.7e-06 54.3 43 62.8
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.7e-06 54.3 41 63.4
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.7e-06 54.3 36 66.7
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 3.5e-06 53.9 42 59.5
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.5e-06 53.9 42 59.5
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.6e-06 53.5 42 59.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.6e-06 53.5 42 57.1
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 6.0e-06 53.1 38 63.2
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 6.0e-06 53.1 38 65.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 6.0e-06 53.1 42 59.5
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 7.8e-06 52.8 38 65.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.8e-06 52.8 42 59.5
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.8e-06 52.8 42 59.5


User provided reference genes

Program Settings