Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.9e-42 174.9 90 100.0
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 3.8e-18 94.7 83 62.7
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 4.9e-18 94.4 74 70.3
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 4.2e-17 91.3 72 63.9
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 5.4e-17 90.9 50 84.0
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 5.4e-17 90.9 72 63.9
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 5.4e-17 90.9 50 82.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 7.1e-17 90.5 50 84.0
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 9.2e-17 90.1 72 65.3
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 9.2e-17 90.1 72 63.9
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 9.2e-17 90.1 57 75.4
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.2e-16 89.7 54 79.6
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 2.1e-16 89.0 55 78.2
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 2.1e-16 89.0 50 82.0
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.7e-16 88.6 56 82.1
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.5e-16 88.2 90 55.6
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 3.5e-16 88.2 80 58.8
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 4.6e-16 87.8 54 75.9
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 6.0e-16 87.4 75 60.0
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 1.3e-15 86.3 53 77.4
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.3e-15 86.3 52 76.9
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 2.3e-15 85.5 88 53.4
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 3.0e-15 85.1 85 56.5
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.9e-15 84.7 55 69.1
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 5.1e-15 84.3 75 58.7
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 5.1e-15 84.3 78 62.8
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 5.1e-15 84.3 66 62.1
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 6.6e-15 84.0 57 71.9
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 8.7e-15 83.6 53 75.5
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 8.7e-15 83.6 78 59.0
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 8.7e-15 83.6 76 57.9
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.5e-14 82.8 50 74.0
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 1.5e-14 82.8 57 66.7
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.5e-14 82.8 92 53.3
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.9e-14 82.4 57 71.9
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.9e-14 82.4 49 79.6
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 3.3e-14 81.6 52 71.2
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 4.3e-14 81.3 77 57.1
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 4.3e-14 81.3 75 56.0
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 4.3e-14 81.3 53 71.7
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 4.3e-14 81.3 57 64.9
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 7.3e-14 80.5 72 55.6
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 7.3e-14 80.5 72 56.9
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 9.6e-14 80.1 73 56.2
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 9.6e-14 80.1 48 77.1
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 9.6e-14 80.1 57 70.2
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 9.6e-14 80.1 92 48.9
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.2e-13 79.7 57 64.9
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.2e-13 79.7 49 71.4
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 1.6e-13 79.3 57 63.2
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 2.1e-13 79.0 48 70.8
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 2.1e-13 79.0 50 72.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 2.8e-13 78.6 73 54.8
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 2.8e-13 78.6 56 62.5
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.8e-13 78.6 57 63.2
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 2.8e-13 78.6 57 63.2
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.8e-13 78.6 57 63.2
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 2.8e-13 78.6 56 62.5
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.8e-13 78.6 73 54.8
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 3.6e-13 78.2 57 63.2
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 3.6e-13 78.2 57 63.2
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 3.6e-13 78.2 57 63.2
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 4.7e-13 77.8 50 68.0
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.1e-12 76.6 68 52.9
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.4e-12 76.3 73 53.4
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 2.4e-12 75.5 71 54.9
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 5.3e-12 74.3 56 58.9
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.5e-11 72.8 47 66.0
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 1.5e-11 72.8 47 66.0
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 2.0e-11 72.4 49 73.5
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 2.0e-11 72.4 83 49.4
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.4e-11 71.6 53 60.4
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.4e-11 71.2 40 72.5
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 9.9e-11 70.1 50 66.0
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 1.3e-10 69.7 46 67.4
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 1.7e-10 69.3 75 49.3
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 2.2e-10 68.9 49 63.3
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 4.9e-10 67.8 85 45.9
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.1e-09 66.6 57 54.4
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 1.9e-09 65.9 51 60.8
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 1.5e-06 56.2 48 60.4
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 1.9e-06 55.8 48 62.5
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 2.5e-06 55.5 50 46.0
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 3.3e-06 55.1 78 48.7
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 5.6e-06 54.3 47 61.7


User provided reference genes

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