Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 0.0e+00 1239.2 601 100.0
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1089.3 573 90.6
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.9e-311 1070.5 561 90.7
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 2.2e-308 1061.6 561 89.5
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.8e-308 1060.8 564 89.2
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 6.5e-308 1060.1 561 89.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.2e-307 1057.7 562 88.6
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 5.5e-307 1057.0 564 89.0
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 9.4e-307 1056.2 561 89.3
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.6e-306 1053.9 561 89.1
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.8e-305 1052.0 561 88.4
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 561 88.8
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 2.5e-304 1048.1 561 87.9
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 4.3e-304 1047.3 561 88.1
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 2.2e-303 1045.0 561 87.7
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 4.8e-303 1043.9 561 88.4
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 6.3e-303 1043.5 565 86.7
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 8.2e-303 1043.1 561 87.5
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.1e-302 1042.7 561 87.3
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.1e-302 1042.7 561 87.5
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.4e-302 1042.3 564 88.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 2.4e-302 1041.6 561 86.8
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 3.1e-302 1041.2 561 87.7
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.1e-302 1041.2 561 87.5
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 561 87.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.0e-301 1038.5 561 88.2
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.4e-301 1037.7 554 87.2
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.5e-301 1037.3 566 85.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 5.9e-301 1036.9 568 87.1
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 5.9e-301 1036.9 561 87.5
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.0e-300 1036.2 561 86.6
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.7e-300 1035.4 552 87.7
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 3.8e-300 1034.2 561 87.2
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 8.5e-300 1033.1 561 87.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.1e-299 1032.7 561 87.9
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.1e-299 1032.7 561 87.0
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.9e-299 1031.9 561 87.0
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 2.5e-299 1031.6 561 86.3
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 2.5e-299 1031.6 561 86.1
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.2e-299 1031.2 561 87.0
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 7.2e-299 1030.0 561 87.7
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 561 86.5
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 561 86.5
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 4.7e-298 1027.3 561 87.2
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.7e-298 1027.3 565 86.2
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.8e-297 1025.4 561 86.8
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 1.8e-297 1025.4 566 86.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 2.3e-297 1025.0 561 86.8
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 6.7e-297 1023.5 561 86.5
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.0e-296 1021.9 561 85.9
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.6e-296 1021.5 561 86.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 3.3e-296 1021.1 561 85.6
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 5.7e-296 1020.4 561 86.1
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 9.7e-296 1019.6 561 86.3
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.3e-295 1019.2 561 86.6
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.2e-295 1018.5 561 86.1
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.1e-294 1016.1 561 85.0
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-294 1015.8 561 85.9
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.4e-294 1015.0 561 85.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.3e-294 1013.8 552 84.8
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 9.1e-294 1013.1 561 84.8
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 9.1e-294 1013.1 561 84.8
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.1e-294 1013.1 562 86.3
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.2e-293 1012.7 561 85.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 2.6e-293 1011.5 570 84.6
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.6e-293 1011.5 561 85.7
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 3.5e-293 1011.1 551 85.3
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.2e-292 1008.4 561 84.3
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 4.2e-291 1004.2 550 84.7
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 4.2e-291 1004.2 562 84.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.6e-290 1001.1 555 84.9
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.7e-290 1000.7 561 83.4
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.0e-289 999.6 559 84.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 5.2e-289 997.3 561 83.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 8.8e-289 996.5 561 83.1
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.5e-288 995.7 534 86.3
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.0e-288 995.3 562 84.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.3e-288 994.6 562 84.2
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 3.3e-288 994.6 565 83.5
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.7e-287 992.3 562 83.6
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 8.2e-287 989.9 557 84.2
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.4e-286 989.2 563 84.0
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.7e-285 984.9 563 83.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.7e-285 984.9 563 83.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 5.9e-285 983.8 561 83.4
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 8.5e-284 979.9 550 83.3
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.5e-283 979.2 562 82.6
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.5e-283 978.4 549 83.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.6e-282 975.7 562 82.7
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.7e-282 974.2 549 83.1
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 8.0e-282 973.4 562 82.4
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-282 973.4 562 82.4
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 8.0e-282 973.4 562 82.4
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-281 973.0 562 82.4
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 1.8e-281 972.2 562 82.2
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.8e-281 972.2 562 81.9
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-281 971.8 562 82.0
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.3e-281 971.8 561 80.9
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.3e-281 971.8 562 81.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.0e-281 971.5 562 82.0
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 4.0e-281 971.1 562 81.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 4.0e-281 971.1 562 81.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.2e-280 969.5 561 80.4
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.4e-280 967.6 562 81.5
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 7.5e-280 966.8 562 81.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.1e-278 963.0 562 81.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.1e-278 963.0 562 81.9
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-278 962.6 562 81.1
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.4e-278 962.6 558 82.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 2.4e-278 961.8 562 80.6
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.2e-277 959.5 562 81.1
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.7e-276 955.7 562 80.1
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.9e-276 954.9 556 80.8
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.8e-276 954.5 565 80.7
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 8.5e-276 953.4 563 80.5
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-275 953.0 562 80.8
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.1e-275 953.0 561 79.0
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.5e-275 951.8 562 79.2
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 6.1e-274 947.2 562 80.1
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.4e-273 946.0 563 81.9
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.0e-273 944.9 551 80.2
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.3e-268 928.7 563 77.8
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 1.9e-267 925.6 554 78.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 7.3e-267 923.7 554 77.4
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.8e-265 919.1 553 78.3
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.4e-263 910.6 561 77.0
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 9.2e-262 906.7 560 75.7
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 2.1e-258 895.6 571 73.7
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.8e-258 895.2 557 79.5
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-258 894.0 524 80.7
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.8e-257 890.6 560 74.8
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 6.8e-257 890.6 562 76.3
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.0e-252 876.7 562 74.7
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.9e-252 874.8 561 74.3
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.1e-246 856.7 561 72.7
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 7.1e-246 854.0 561 73.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 3.0e-244 848.6 553 74.0
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.2e-238 828.6 466 81.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.5e-237 825.1 561 70.1
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 9.3e-222 773.9 418 88.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.9e-213 744.2 565 66.9
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 8.7e-212 740.7 561 67.2
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.9e-207 725.7 425 79.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.7e-186 656.8 373 80.4
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 6.7e-180 634.8 541 55.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.9e-167 592.8 327 82.3
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.2e-166 589.3 417 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.2e-163 580.9 488 54.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.0e-163 580.1 526 52.7
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.5e-158 563.1 290 87.9
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.7e-146 523.9 418 58.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-142 511.1 554 51.6
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.5e-142 508.1 560 51.6
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.5e-128 463.0 466 54.5
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.7e-127 460.7 318 69.2
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 5.1e-87 326.2 211 74.4
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 9.7e-86 322.0 549 38.6
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.1e-81 308.5 491 36.3
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 4.5e-67 260.0 195 64.6
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-65 255.4 195 63.6
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 2.0e-62 244.6 166 68.1
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.6e-51 208.4 133 80.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.5e-51 207.2 115 83.5
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.2e-49 200.7 128 80.5
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-44 184.9 166 60.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 4.1e-44 183.7 117 70.9
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 7.0e-44 183.0 166 60.8
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-43 182.2 166 60.8
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-42 178.7 166 60.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 3.4e-38 164.1 324 31.8
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.7e-34 151.8 495 26.5
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 5.2e-31 140.2 87 71.3
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.4e-29 133.3 87 73.6
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-28 131.3 213 38.5
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 9.2e-28 129.4 76 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.6e-27 128.6 85 65.9
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-21 109.0 166 44.0
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 4.9e-21 107.1 183 38.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 2.5e-17 94.7 103 45.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 7.1e-12 76.6 46 67.4
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 9.9e-06 56.2 40 75.0


User provided reference genes

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